Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G142200 Theobroma cacao HOM05D012218 ORTHO05D010844 0.0e+00 1553.9 806 100.0
Gorai.012G037100 Gossypium raimondii HOM05D012218 ORTHO05D010844 1.3e-231 807.0 768 61.8
Gohir.A05G382500 Gossypium hirsutum HOM05D012218 ORTHO05D010844 8.6e-231 804.3 764 62.0
Duzib187G0544 Durio zibethinus HOM05D012218 ORTHO05D010844 1.1e-230 803.9 666 67.7
Gohir.D04G032700 Gossypium hirsutum HOM05D012218 ORTHO05D010844 5.1e-223 778.5 763 60.7
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 9.0e-79 299.3 300 59.0
Dinv07458 Davidia involucrata HOM05D010873 ORTHO05D013124 6.7e-50 203.4 830 30.6
Potri.007G098300 Populus trichocarpa HOM05D012218 ORTHO05D017165 7.2e-44 183.3 834 28.5
Haze_16528 Corylus avellana HOM05D012473 ORTHO05D010844 3.0e-42 177.9 748 28.3
CiPaw.03G115200 Carya illinoinensis HOM05D012218 ORTHO05D010844 3.9e-42 177.6 981 28.0
QL10p005044 Quercus lobata HOM05D012473 ORTHO05D010844 3.9e-42 177.6 839 29.6
Sabra07G0081700 Salix brachista HOM05D012218 ORTHO05D017165 1.5e-41 175.6 813 28.4
TWI31G0860 Tripterygium wilfordii HOM05D012218 ORTHO05D010844 1.8e-39 168.7 808 28.2
TAR381G1694 Trochodendron aralioides HOM05D012218 ORTHO05D010844 3.8e-37 161.0 979 24.8
Manes.05G184500 Manihot esculenta HOM05D012218 ORTHO05D010844 1.1e-36 159.5 875 26.3
FAN23G1528 Fragaria x ananassa HOM05D012473 ORTHO05D010844 1.0e-34 152.9 788 27.8
TPR.G28364 Trifolium pratense HOM05D012459 ORTHO05D010844 2.2e-32 145.2 832 27.6
Cfa001988 Carpinus fangiana HOM05D012473 ORTHO05D010844 8.2e-32 143.3 751 27.6
FAN28G1165 Fragaria x ananassa HOM05D012473 ORTHO05D010844 9.1e-31 139.8 809 26.9
QL02p071969 Quercus lobata HOM05D012473 ORTHO05D010844 4.5e-30 137.5 820 29.0
Medtr6g078430 Medicago truncatula HOM05D012459 ORTHO05D010844 1.3e-29 136.0 807 25.7
Ca_25366_v3 Cicer arietinum L. HOM05D012459 ORTHO05D010844 6.5e-29 133.7 858 26.2
Cpa.g.sc37.40 Carica papaya HOM05D001512 ORTHO05D001574 1.1e-28 132.9 555 29.7
FAN19G1264 Fragaria x ananassa HOM05D012473 ORTHO05D010844 4.2e-28 131.0 802 25.8
Lalb_Chr19g0134401 Lupinus albus HOM05D012459 ORTHO05D010844 2.1e-27 128.6 617 28.0
MD15G1138700 Malus domestica HOM05D012473 ORTHO05D010844 2.6e-25 121.7 781 24.7
Phvul.004G137400 Phaseolus vulgaris HOM05D012459 ORTHO05D010844 2.6e-25 121.7 846 25.9
Actinidia06596 Actinidia chinensis HOM05D010873 ORTHO05D013124 9.8e-25 119.8 985 25.9
FvH4_1g25520 Fragaria vesca HOM05D012473 ORTHO05D010844 2.2e-24 118.6 797 25.8
Glyma.16G211200 Glycine max HOM05D012459 ORTHO05D010844 2.2e-24 118.6 845 24.9
Psat0s4832g0040 Pisum sativum HOM05D012459 ORTHO05D010844 7.0e-23 113.6 591 26.1
Glyma.16G211400 Glycine max HOM05D000005 ORTHO05D010844 2.9e-21 108.2 773 23.9
Glyma.09G162200 Glycine max HOM05D012459 ORTHO05D010844 5.0e-21 107.5 535 27.7
FAN26G1572 Fragaria x ananassa HOM05D012473 ORTHO05D010844 6.5e-21 107.1 790 26.8
THA.LOC104800245 Tarenaya hassleriana HOM05D009813 ORTHO05D011936 1.5e-20 105.9 749 24.7
Lalb_Chr17g0336721 Lupinus albus HOM05D012459 ORTHO05D010844 7.2e-20 103.6 379 29.8
Aa31LG1G18120 Aethionema arabicum HOM05D009813 ORTHO05D011936 1.2e-19 102.8 156 39.1
Lj2g0023112 Lotus japonicus HOM05D012459 ORTHO05D010844 3.6e-19 101.3 888 22.5
Sc09g0002200 Simmondsia chinensis HOM05D030946 ORTHO05D010844 1.2e-17 96.3 185 37.8
arahy.Tifrunner.gnm1.ann1.9KKX2T Arachis hypogaea HOM05D012459 ORTHO05D010844 5.4e-15 87.4 531 24.7
arahy.Tifrunner.gnm1.ann1.UJV3YP Arachis hypogaea HOM05D012459 ORTHO05D010844 4.5e-14 84.3 514 24.1
Nn3g21159 Nelumbo nucifera HOM05D012218 ORTHO05D019306 4.5e-14 84.3 935 23.0
VMungo0464G0894 Vigna mungo HOM05D000005 ORTHO05D012186 5.9e-14 84.0 785 24.1
AL8G40940 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 7.8e-14 83.6 160 34.4
AL8G40880 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 1.0e-13 83.2 160 34.4
Rhsim10G0129700 Rhododendron simsii HOM05D017996 ORTHO05D017165 1.0e-13 83.2 760 23.0
EL10Ac4g09661 Beta vulgaris HOM05D030946 ORTHO05D010844 1.1e-12 79.7 247 30.4
PGR102G2674 Punica granatum HOM05D012473 ORTHO05D010844 2.5e-12 78.6 704 25.6
BcaC04g23353 Brassica carinata HOM05D009813 ORTHO05D011936 4.3e-12 77.8 142 37.3
MELO3C005461.2 Cucumis melo HOM05D036858 ORTHO05D010844 7.3e-12 77.0 354 28.8
BcaNung04641 Brassica carinata HOM05D009813 ORTHO05D011936 1.2e-11 76.3 160 33.1
Sp2g26820 Schrenkiella parvula HOM05D009813 ORTHO05D011936 1.6e-11 75.9 165 33.9
Sed0024256 Sechium edule HOM05D036858 ORTHO05D010844 2.1e-11 75.5 446 23.5
ClCG01G004750 Citrullus lanatus HOM05D036858 ORTHO05D010844 2.8e-11 75.1 442 27.6
Oeu028233.1 Olea europaea HOM05D010873 ORTHO05D013124 2.8e-11 75.1 864 22.1
CARHR277640 Cardamine hirsuta HOM05D009813 ORTHO05D011936 4.7e-11 74.3 162 33.3
A09p08400 Brassica napus HOM05D009813 ORTHO05D011936 8.0e-11 73.6 141 35.5
BraA09t36490Z Brassica rapa HOM05D009813 ORTHO05D011936 8.0e-11 73.6 141 35.5
Thhalv10029311m.g Eutrema salsugineum HOM05D009813 ORTHO05D011936 8.0e-11 73.6 147 32.0
vmacro12771 Vaccinium macrocarpon HOM05D017996 ORTHO05D017165 8.0e-11 73.6 165 37.6
SalBow6G5290 Salvia bowleyana HOM05D010873 ORTHO05D013124 2.0e-09 68.9 857 23.2
AT5G63720 Arabidopsis thaliana HOM05D009813 ORTHO05D011936 7.5e-09 67.0 245 26.1
CARHR098770 Cardamine hirsuta HOM05D009813 ORTHO05D011936 2.9e-08 65.1 156 33.3
AUR62000557 Chenopodium quinoa HOM05D030946 ORTHO05D010844 4.9e-08 64.3 73 47.9
PSO017G0880 Papaver somniferum HOM05D022603 ORTHO05D019306 1.1e-07 63.2 157 32.5
CSS0038628 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 2.4e-07 62.0 149 32.9
HPP92_021115 Vanilla planifolia HOM05D012218 ORTHO05D010844 2.4e-07 62.0 182 28.0
CANSAT35G0648 Cannabis sativa HOM05D012459 ORTHO05D010844 3.2e-07 61.6 173 34.7
AUR62003591 Chenopodium quinoa HOM05D030946 ORTHO05D010844 3.2e-07 61.6 717 22.6
CSS0006956 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 5.4e-07 60.8 131 35.1
CSS0018747 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 5.4e-07 60.8 131 35.1
PSO384G0752 Papaver somniferum HOM05D022603 ORTHO05D019306 7.0e-07 60.5 166 32.5
CSS0030355 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 9.2e-07 60.1 149 32.9
BolC9t53863H Brassica oleracea HOM05D009813 ORTHO05D011936 1.6e-06 59.3 141 31.9
DCAR_022171 Daucus carota HOM05D010873 ORTHO05D013124 1.6e-06 59.3 513 24.0


User provided reference genes

Program Settings