Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G140100 Theobroma cacao HOM05D006944 ORTHO05D013071 1.3e-51 206.5 135 100.0
Thecc.01G139600 Theobroma cacao HOM05D006944 ORTHO05D013071 3.7e-46 188.3 135 94.1
Duzib187G1015 Durio zibethinus HOM05D006944 ORTHO05D013071 2.2e-30 136.0 136 66.2
Thecc.02G007200 Theobroma cacao HOM05D006944 ORTHO05D013071 1.4e-24 116.7 138 65.9
Duzib187G0303 Durio zibethinus HOM05D006944 ORTHO05D013071 3.1e-24 115.5 136 69.1
Thecc.02G007600 Theobroma cacao HOM05D006944 ORTHO05D013071 1.2e-23 113.6 138 68.1
Thecc.02G007400 Theobroma cacao HOM05D006944 ORTHO05D013071 7.6e-23 110.9 138 65.9
Gohir.D12G046200 Gossypium hirsutum HOM05D006944 ORTHO05D013071 1.4e-21 106.7 129 69.0
Gorai.008G048800 Gossypium raimondii HOM05D006944 ORTHO05D013071 1.4e-21 106.7 129 69.0
Thecc.02G007800 Theobroma cacao HOM05D006944 ORTHO05D013071 7.1e-21 104.4 131 65.6
Gorai.008G048900 Gossypium raimondii HOM05D006944 ORTHO05D013071 9.3e-21 104.0 129 67.4
Gohir.A12G047500 Gossypium hirsutum HOM05D006944 ORTHO05D013071 1.6e-20 103.2 129 68.2
Gohir.A12G047400 Gossypium hirsutum HOM05D006944 ORTHO05D013071 2.7e-20 102.4 129 68.2
Duzib132G0544 Durio zibethinus HOM05D006944 ORTHO05D013071 1.8e-19 99.8 135 63.7
Duzib132G0178 Durio zibethinus HOM05D006944 ORTHO05D013071 6.7e-19 97.8 128 67.2
Thecc.02G007500 Theobroma cacao HOM05D006944 ORTHO05D013071 2.5e-18 95.9 138 52.2
Gohir.D02G239400 Gossypium hirsutum HOM05D006944 ORTHO05D036044 2.1e-17 92.8 137 52.6
Duzib052G0351 Durio zibethinus HOM05D006944 ORTHO05D013071 2.8e-17 92.4 121 51.2
COL.COLO4_12073 Corchorus olitorius HOM05D006944 ORTHO05D013071 4.8e-17 91.7 137 62.0
Gohir.A03G217500 Gossypium hirsutum HOM05D006944 ORTHO05D036044 2.4e-16 89.4 134 47.0
Thecc.07G172800 Theobroma cacao HOM05D006944 ORTHO05D009910 9.9e-15 84.0 109 46.8
Thecc.07G173000 Theobroma cacao HOM05D006944 ORTHO05D009910 9.9e-15 84.0 103 61.2
Gorai.005G267700 Gossypium raimondii HOM05D006944 ORTHO05D009910 1.3e-14 83.6 133 51.1
Thecc.07G173400 Theobroma cacao HOM05D006944 ORTHO05D009910 1.3e-14 83.6 104 43.3
Gohir.D02G239500 Gossypium hirsutum HOM05D006944 ORTHO05D009910 1.7e-14 83.2 105 48.6
Thecc.K0001700 Theobroma cacao HOM05D006944 ORTHO05D009910 2.9e-14 82.4 108 46.3
Gorai.005G267800 Gossypium raimondii HOM05D006944 ORTHO05D036044 4.9e-14 81.6 131 45.0
COL.COLO4_12078 Corchorus olitorius HOM05D006944 ORTHO05D009910 1.4e-13 80.1 120 55.0
COL.COLO4_17646 Corchorus olitorius HOM05D006944 ORTHO05D013071 4.2e-13 78.6 133 58.6
Duzib187G0489 Durio zibethinus HOM05D006944 ORTHO05D009910 1.1e-10 70.5 103 41.7
Duzib213G0044 Durio zibethinus HOM05D006944 ORTHO05D009910 1.1e-10 70.5 100 44.0
Gorai.004G269200 Gossypium raimondii HOM05D006944 ORTHO05D009910 1.5e-10 70.1 93 45.2
Gohir.A13G125001 Gossypium hirsutum HOM05D006944 ORTHO05D009910 2.5e-10 69.3 130 40.0
Gohir.A08G232050 Gossypium hirsutum HOM05D006944 ORTHO05D009910 4.3e-10 68.6 92 46.7
Duzib213G0468 Durio zibethinus HOM05D006944 ORTHO05D009910 5.6e-10 68.2 118 40.7
Gohir.D08G252466 Gossypium hirsutum HOM05D006944 ORTHO05D009910 9.6e-10 67.4 87 47.1
Gorai.013G144500 Gossypium raimondii HOM05D006944 ORTHO05D048163 1.3e-09 67.0 109 37.6
Gohir.D13G128501 Gossypium hirsutum HOM05D006944 ORTHO05D048163 2.1e-09 66.2 110 37.3
Gohir.A08G232200 Gossypium hirsutum HOM05D006944 ORTHO05D009910 2.8e-09 65.9 99 40.4
Duzib213G0640 Durio zibethinus HOM05D006944 ORTHO05D009910 4.8e-09 65.1 125 35.2
Gorai.013G143700 Gossypium raimondii HOM05D006944 ORTHO05D009910 8.2e-09 64.3 87 41.4
Gohir.D13G128600 Gossypium hirsutum HOM05D006944 ORTHO05D046837 1.1e-08 63.9 129 38.0
Gorai.013G144700 Gossypium raimondii HOM05D006944 ORTHO05D046837 1.1e-08 63.9 129 38.0
COL.COLO4_32294 Corchorus olitorius HOM05D006944 ORTHO05D009910 1.4e-08 63.5 90 45.6
Gohir.A13G124500 Gossypium hirsutum HOM05D006944 ORTHO05D009910 1.8e-08 63.2 94 37.2
Thecc.07G164100 Theobroma cacao HOM05D006944 ORTHO05D045182 3.1e-08 62.4 58 56.9
Thecc.05G142800 Theobroma cacao HOM05D006944 ORTHO05D035085 4.0e-08 62.0 116 40.5
COL.COLO4_32290 Corchorus olitorius HOM05D006944 ORTHO05D009910 6.9e-08 61.2 84 41.7
Gohir.D13G128233 Gossypium hirsutum HOM05D006944 ORTHO05D009910 6.9e-08 61.2 88 39.8
Duzib213G0885 Durio zibethinus HOM05D006944 ORTHO05D186234 9.0e-08 60.8 56 55.4
TWI15G1222 Tripterygium wilfordii HOM05D010260 ORTHO05D009910 1.2e-07 60.5 119 48.7
Duzib211G0488 Durio zibethinus HOM05D006944 ORTHO05D009910 2.6e-07 59.3 53 54.7
Gohir.A01G098051 Gossypium hirsutum HOM05D006944 ORTHO05D009910 2.6e-07 59.3 101 38.6
Thecc.05G142700 Theobroma cacao HOM05D006944 ORTHO05D009910 2.6e-07 59.3 108 37.0
Thecc.05G191200 Theobroma cacao HOM05D006944 ORTHO05D035094 2.6e-07 59.3 89 38.2
COL.COLO4_32292 Corchorus olitorius HOM05D006944 ORTHO05D009910 3.4e-07 58.9 50 56.0
Thecc.07G175300 Theobroma cacao HOM05D006944 ORTHO05D009910 3.4e-07 58.9 60 50.0
Gohir.A01G097900 Gossypium hirsutum HOM05D006944 ORTHO05D009910 4.5e-07 58.5 56 55.4
Thecc.07G175700 Theobroma cacao HOM05D006944 ORTHO05D009910 5.8e-07 58.2 55 52.7
COL.COLO4_32287 Corchorus olitorius HOM05D006944 ORTHO05D009910 1.0e-06 57.4 54 50.0
Duzib187G0900 Durio zibethinus HOM05D006944 ORTHO05D009910 1.0e-06 57.4 104 42.3
Gohir.D01G082400 Gossypium hirsutum HOM05D006944 ORTHO05D009910 1.0e-06 57.4 56 53.6
Gorai.002G107800 Gossypium raimondii HOM05D006944 ORTHO05D009910 1.0e-06 57.4 56 53.6
Gorai.013G143500 Gossypium raimondii HOM05D006944 ORTHO05D047841 1.0e-06 57.4 53 50.9
Duzib268G0495 Durio zibethinus HOM05D006944 ORTHO05D009910 1.7e-06 56.6 54 51.9
Thecc.02G266200 Theobroma cacao HOM05D011192 ORTHO05D015638 1.7e-06 56.6 103 38.8
COL.COLO4_23516 Corchorus olitorius HOM05D029339 ORTHO05D009910 2.2e-06 56.2 57 50.9
Duzib187G0992 Durio zibethinus HOM05D006944 ORTHO05D045182 2.2e-06 56.2 50 58.0
Gohir.A08G232100 Gossypium hirsutum HOM05D006944 ORTHO05D009910 2.2e-06 56.2 48 64.6
Duzib032G0001 Durio zibethinus HOM05D006944 ORTHO05D035094 2.9e-06 55.8 110 42.7
Duzib128G1158 Durio zibethinus HOM05D006944 ORTHO05D035094 2.9e-06 55.8 110 42.7
Duzib128G1583 Durio zibethinus HOM05D006944 ORTHO05D009910 2.9e-06 55.8 52 50.0
Gorai.002G108100 Gossypium raimondii HOM05D006944 ORTHO05D009910 2.9e-06 55.8 101 52.5
TWI38G0421 Tripterygium wilfordii HOM05D010260 ORTHO05D009910 2.9e-06 55.8 106 37.7
Duzib213G0882 Durio zibethinus HOM05D006944 ORTHO05D009910 3.8e-06 55.5 97 35.1
TWI15G0074 Tripterygium wilfordii HOM05D010260 ORTHO05D009910 3.8e-06 55.5 97 54.6
Duzib187G1235 Durio zibethinus HOM05D006944 ORTHO05D186055 4.9e-06 55.1 98 61.2
Gohir.D13G128100 Gossypium hirsutum HOM05D006944 ORTHO05D047841 4.9e-06 55.1 53 49.1
Duzib093G0469 Durio zibethinus HOM05D006944 ORTHO05D035085 6.5e-06 54.7 119 33.6
TWI38G0902 Tripterygium wilfordii HOM05D010260 ORTHO05D009910 6.5e-06 54.7 109 34.9
TWI63G0374 Tripterygium wilfordii HOM05D010260 ORTHO05D009910 6.5e-06 54.7 115 40.0
COL.COLO4_03334 Corchorus olitorius HOM05D006944 ORTHO05D015628 8.4e-06 54.3 53 45.3
COL.COLO4_32286 Corchorus olitorius HOM05D006944 ORTHO05D009910 8.4e-06 54.3 84 39.3


User provided reference genes

Program Settings