Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.4e-281 971.5 475 100.0
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.5e-254 881.7 477 89.5
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.0e-252 876.3 477 89.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.5e-251 870.2 477 88.5
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.4e-249 865.9 470 89.8
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.2e-229 797.3 473 82.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.1e-228 796.6 474 81.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.0e-228 794.7 474 81.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 6.8e-228 793.9 474 81.4
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.5e-227 792.7 480 80.2
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 5.8e-227 790.8 473 80.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.9e-226 787.7 467 80.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.4e-226 787.3 474 79.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.2e-225 785.0 472 80.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.4e-225 784.3 465 81.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 5.4e-225 784.3 472 79.2
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.1e-224 782.3 473 80.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.1e-224 782.3 471 79.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-224 781.6 465 80.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.0e-224 780.8 465 81.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 3.9e-223 778.1 474 79.1
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 6.6e-223 777.3 473 80.1
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.1e-222 776.5 467 79.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-222 776.2 472 80.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.5e-222 776.2 472 78.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.9e-222 775.8 469 80.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.9e-222 775.8 475 79.2
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.5e-222 775.4 472 79.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 9.6e-222 773.5 472 78.6
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 9.6e-222 773.5 472 78.8
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.6e-221 772.7 468 78.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.8e-221 771.9 471 79.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.8e-221 771.2 472 78.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 4.8e-221 771.2 471 77.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 8.1e-221 770.4 478 78.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 9.0e-220 766.9 467 79.2
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 3.4e-219 765.0 472 77.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.4e-218 760.8 474 76.8
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 8.4e-218 760.4 474 77.4
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.2e-217 758.1 473 81.6
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 5.4e-217 757.7 469 78.7
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.0e-215 753.4 458 79.7
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.0e-215 751.9 476 77.5
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.0e-215 751.9 454 80.2
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.3e-214 748.0 477 80.1
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 9.6e-214 746.9 474 75.3
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.8e-213 745.3 474 76.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 4.8e-213 744.6 477 76.3
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.4e-212 742.3 472 78.0
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.1e-212 741.9 474 75.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 9.0e-212 740.3 469 73.8
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 7.6e-211 737.3 469 77.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.2e-210 735.7 477 75.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.9e-210 735.3 467 75.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.1e-209 733.4 469 75.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 9.3e-209 730.3 474 75.5
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.3e-207 725.7 472 76.5
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.3e-207 725.7 426 82.2
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.0e-207 725.3 470 74.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.9e-207 724.9 439 79.7
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 5.1e-207 724.5 452 78.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 5.1e-207 724.5 470 74.5
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 8.7e-207 723.8 470 74.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 9.6e-206 720.3 470 74.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.6e-205 719.5 449 77.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.1e-204 715.3 434 80.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 9.0e-204 713.8 465 74.4
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 6.5e-202 707.6 547 65.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 8.4e-202 707.2 476 73.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.1e-201 706.8 471 73.2
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.4e-201 706.4 472 74.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 9.3e-201 703.7 468 72.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-200 703.0 472 73.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-200 703.0 460 75.9
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.1e-200 702.6 473 73.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-199 699.9 472 74.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.8e-199 699.5 473 73.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.3e-199 699.1 474 73.4
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.3e-199 699.1 474 73.6
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.1e-198 696.8 473 72.1
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 3.3e-198 695.3 472 73.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 7.4e-198 694.1 473 73.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.1e-197 692.6 470 72.8
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.7e-197 691.8 473 72.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 3.7e-197 691.8 472 71.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.7e-197 691.8 474 71.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 6.3e-197 691.0 470 71.5
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.8e-196 689.5 471 71.5
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 5.3e-196 688.0 471 73.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-195 686.0 473 72.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.0e-195 686.0 473 72.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.6e-195 685.6 471 73.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.2e-193 678.3 414 77.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 6.7e-191 671.0 427 75.9
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.7e-190 667.9 519 63.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 6.9e-188 661.0 473 70.0
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 6.9e-188 661.0 469 69.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.6e-187 659.1 498 66.9
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.5e-187 658.3 472 69.5
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.2e-186 656.0 447 72.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.5e-186 654.1 470 69.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.2e-185 651.7 475 68.0
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 6.1e-184 647.9 482 68.9
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.8e-183 646.4 415 75.4
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.7e-182 640.6 531 64.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.9e-179 631.3 363 84.6
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.2e-176 623.6 368 80.2
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-171 607.1 479 66.4
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 7.2e-169 597.8 472 67.6
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 8.8e-167 590.9 479 63.0
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-166 590.1 343 81.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.2e-165 586.3 408 71.3
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.9e-161 573.2 509 58.3
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.2e-161 572.0 469 64.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.9e-155 551.6 472 61.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.3e-154 550.4 488 59.4
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.5e-153 547.0 472 59.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.4e-142 508.8 477 59.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.0e-138 496.1 468 54.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 8.6e-130 468.0 547 47.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-127 460.7 329 75.1
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 4.4e-118 429.1 270 74.4
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.9e-116 423.7 306 67.6
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-108 397.5 230 84.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.4e-103 380.9 289 73.0
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.6e-91 340.9 481 43.2
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.5e-86 322.8 383 46.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.1e-84 315.5 205 71.7
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.0e-82 311.6 271 59.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 5.0e-77 292.7 485 36.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-75 287.3 248 63.3
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.3e-73 280.0 272 52.2
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 7.7e-70 268.9 507 36.9
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-64 251.5 477 37.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.2e-62 245.0 458 37.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 8.8e-58 228.8 181 63.0
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.4e-57 226.5 332 42.8
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-56 224.6 167 67.7
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 4.8e-56 223.0 209 53.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 9.4e-52 208.8 198 53.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.1e-51 206.1 111 84.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.7e-50 202.6 111 82.9
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.6e-49 200.7 111 82.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.7e-46 190.7 201 53.2
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.4e-41 173.7 125 65.6
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.8e-41 172.2 111 73.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.4e-39 167.5 107 74.8
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.1e-39 165.6 314 36.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 7.7e-38 162.5 107 72.0
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.0e-34 150.6 122 58.2
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.8e-32 144.1 92 69.6
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.4e-31 141.0 116 62.1
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.8e-29 133.7 67 95.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 6.4e-24 116.3 125 55.2
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 7.0e-23 112.8 64 79.7
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.7e-16 91.7 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.5e-14 84.0 74 60.8
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 8.1e-11 72.8 47 70.2
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 3.1e-10 70.9 55 65.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 5.8e-09 66.6 88 44.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.1e-06 58.2 39 69.2
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.6e-06 57.0 39 66.7


User provided reference genes

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