Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 4.5e-124 448.0 232 100.0
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 4.8e-102 374.8 236 83.5
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.4e-93 346.7 235 81.7
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.5e-90 335.9 232 76.7
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 5.6e-90 334.7 232 76.7
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.9e-84 314.7 224 74.1
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 5.8e-79 298.1 238 67.2
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 1.9e-77 293.1 239 68.2
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 1.6e-76 290.0 232 69.0
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 2.0e-76 289.7 245 65.7
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 3.9e-75 285.4 241 68.0
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.5e-74 282.7 242 64.5
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 3.3e-74 282.3 234 67.9
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 7.3e-74 281.2 242 66.9
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 2.1e-73 279.6 246 63.0
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.8e-73 279.3 247 62.8
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 3.6e-73 278.9 222 69.8
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 6.2e-73 278.1 245 66.1
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 1.4e-72 276.9 242 63.6
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 2.3e-72 276.2 226 69.0
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 2.3e-72 276.2 239 64.9
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 4.0e-72 275.4 237 63.3
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 5.2e-72 275.0 249 63.9
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 6.8e-72 274.6 231 64.9
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 8.9e-72 274.2 240 65.4
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.2e-71 273.9 232 65.1
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 4.4e-71 271.9 228 65.8
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 5.8e-71 271.6 237 66.2
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 5.8e-71 271.6 236 66.9
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 9.9e-71 270.8 229 65.1
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 3.7e-70 268.9 246 65.9
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.4e-69 266.9 236 64.8
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 1.9e-69 266.5 241 62.2
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 3.2e-69 265.8 227 64.3
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 3.2e-69 265.8 200 70.5
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.1e-69 265.4 290 54.8
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 5.4e-69 265.0 237 62.9
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 5.4e-69 265.0 251 61.4
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 7.1e-69 264.6 236 64.4
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.1e-68 263.1 183 74.3
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 2.7e-68 262.7 231 63.6
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 3.5e-68 262.3 235 64.3
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 4.6e-68 261.9 236 63.6
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 1.0e-67 260.8 152 86.8
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 1.3e-67 260.4 239 60.7
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.1e-66 257.3 155 83.2
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.9e-66 256.5 234 61.5
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 1.2e-65 253.8 261 59.0
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 1.2e-65 253.8 242 61.6
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 2.1e-65 253.1 260 57.7
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 4.7e-65 251.9 156 81.4
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 8.9e-64 247.7 226 61.5
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 2.6e-63 246.1 244 60.2
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 9.9e-63 244.2 236 58.5
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 1.9e-61 240.0 232 59.5
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 3.2e-61 239.2 240 59.6
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 1.3e-59 233.8 243 59.3
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 4.3e-58 228.8 198 66.2
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 2.8e-57 226.1 156 70.5
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 9.3e-53 211.1 158 65.8
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 5.3e-48 195.3 155 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 2.0e-47 193.4 179 57.0
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 2.1e-44 183.3 231 50.2
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 1.1e-42 177.6 98 85.7
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 4.3e-42 175.6 205 49.3
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 3.5e-36 156.0 242 45.0
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 5.3e-32 142.1 101 70.3
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.7e-28 129.8 166 47.6
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.7e-27 124.8 143 50.3
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 5.5e-21 105.5 127 55.1
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 8.8e-19 98.2 134 37.3
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.1e-16 89.4 51 84.3
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 5.3e-16 89.0 48 89.6
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 6.9e-16 88.6 48 87.5
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 2.0e-15 87.0 46 91.3
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.0e-14 84.7 80 62.5
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 6.5e-14 82.0 58 72.4
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 6.5e-14 82.0 46 87.0
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.6e-12 77.4 46 84.8
Potri.007G105401 Populus trichocarpa HOM05D007927 ORTHO05D010029 1.6e-12 77.4 111 51.4
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.9e-06 56.6 29 93.1


User provided reference genes

Program Settings