Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 1.1e-44 183.0 95 100.0
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 9.4e-28 126.7 99 76.8
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.8e-26 122.5 97 75.3
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 2.9e-21 105.1 91 64.8
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 1.1e-20 103.2 97 59.8
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 6.1e-19 97.4 94 53.2
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 8.0e-19 97.1 74 67.6
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.0e-18 96.7 89 59.6
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.0e-18 96.7 100 58.0
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.4e-18 96.3 98 59.2
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 1.8e-18 95.9 90 63.3
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 8.8e-18 93.6 90 61.1
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 1.2e-17 93.2 88 59.1
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.2e-17 93.2 87 55.2
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.5e-17 92.8 95 55.8
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 2.0e-17 92.4 102 52.9
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.6e-17 92.0 97 53.6
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 3.4e-17 91.7 90 56.7
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 4.4e-17 91.3 94 54.3
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.8e-17 90.1 95 51.6
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.3e-16 89.7 95 48.4
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 1.7e-16 89.4 102 54.9
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 2.2e-16 89.0 95 54.7
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 2.2e-16 89.0 95 53.7
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.8e-16 88.6 97 53.6
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 2.8e-16 88.6 63 73.0
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 3.7e-16 88.2 88 54.5
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 3.7e-16 88.2 95 52.6
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 3.7e-16 88.2 88 54.5
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 4.8e-16 87.8 94 53.2
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 4.8e-16 87.8 102 50.0
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 8.3e-16 87.0 90 55.6
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 8.3e-16 87.0 96 52.1
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 1.1e-15 86.7 102 49.0
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 1.8e-15 85.9 94 54.3
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 3.1e-15 85.1 108 52.8
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 3.1e-15 85.1 59 74.6
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 3.1e-15 85.1 94 53.2
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 5.4e-15 84.3 97 51.5
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.4e-15 84.3 97 51.5
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 5.4e-15 84.3 93 52.7
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 9.1e-15 83.6 106 50.9
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 1.2e-14 83.2 88 52.3
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 2.0e-14 82.4 98 52.0
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 4.5e-14 81.3 99 45.5
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 4.5e-14 81.3 99 47.5
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 1.0e-13 80.1 98 44.9
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.0e-13 80.1 94 47.9
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 3.8e-13 78.2 101 47.5
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 5.0e-13 77.8 87 51.7
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 1.5e-12 76.3 100 47.0
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 1.9e-12 75.9 76 55.3
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 2.5e-12 75.5 96 47.9
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 2.5e-12 75.5 117 43.6
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 2.5e-12 75.5 109 44.0
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 2.5e-12 75.5 62 62.9
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 3.2e-12 75.1 103 47.6
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 9.5e-12 73.6 91 47.3
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.6e-11 72.8 58 69.0
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 2.8e-11 72.0 98 44.9
Haze_25223 Corylus avellana HOM05D008093 ORTHO05D009840 6.1e-11 70.9 67 62.7
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 6.1e-11 70.9 58 67.2
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 2.3e-10 68.9 103 40.8
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.5e-09 66.2 53 62.3
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 3.4e-09 65.1 89 42.7
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 3.4e-09 65.1 89 42.7
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 5.7e-09 64.3 91 41.8
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 5.7e-09 64.3 91 41.8
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 7.5e-09 63.9 89 40.4
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 1.7e-08 62.8 91 42.9
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 1.7e-08 62.8 55 56.4
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 2.2e-08 62.4 93 37.6
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 2.2e-08 62.4 89 39.3
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 2.2e-08 62.4 89 39.3
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 2.2e-08 62.4 89 44.9
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 2.2e-08 62.4 47 66.0
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 2.8e-08 62.0 91 37.4
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 6.3e-08 60.8 97 40.2
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 6.3e-08 60.8 87 37.9
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 1.1e-07 60.1 96 40.6
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 1.4e-07 59.7 87 37.9
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 2.4e-07 58.9 47 63.8
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 7.0e-07 57.4 47 57.4
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 1.6e-06 56.2 76 39.5
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 2.0e-06 55.8 48 54.2
Cpa.g.sc42.146 Carica papaya HOM05D008093 ORTHO05D009840 2.0e-06 55.8 51 58.8
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 2.7e-06 55.5 69 44.9
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 5.9e-06 54.3 44 59.1


User provided reference genes

Program Settings