Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.7e-202 709.1 359 100.0
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 7.5e-110 401.4 379 63.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 2.9e-98 362.8 369 58.0
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 8.9e-95 351.3 373 56.6
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 2.0e-91 340.1 364 56.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 3.5e-91 339.3 364 56.0
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 2.5e-89 333.2 364 55.8
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 2.3e-82 310.1 374 51.1
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 4.0e-79 299.3 380 49.5
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 8.9e-79 298.1 376 49.7
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.5e-78 297.4 369 51.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 2.6e-78 296.6 377 49.6
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 9.9e-78 294.7 362 48.9
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 9.9e-78 294.7 359 52.1
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 9.2e-76 288.1 370 50.3
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 4.6e-75 285.8 371 47.7
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.5e-73 280.0 344 51.7
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 2.5e-73 280.0 375 47.5
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 1.2e-72 277.7 371 46.9
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.7e-72 275.8 362 48.1
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 4.4e-70 269.2 375 45.1
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 2.9e-69 266.5 364 45.6
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 3.8e-69 266.2 357 49.3
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 9.2e-68 261.5 376 45.2
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 2.7e-67 260.0 369 47.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 6.0e-67 258.8 371 45.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 1.3e-66 257.7 360 47.5
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 2.3e-66 256.9 351 49.0
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.3e-65 252.7 368 47.3
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 5.6e-65 252.3 362 47.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 4.8e-64 249.2 344 46.2
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 6.2e-64 248.8 360 45.8
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 8.1e-64 248.4 364 45.6
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 1.1e-63 248.1 364 43.7
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 1.4e-63 247.7 374 44.7
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 1.4e-63 247.7 360 46.7
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 2.4e-63 246.9 358 45.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 4.0e-63 246.1 367 44.7
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 5.3e-63 245.7 378 44.4
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 6.9e-63 245.4 209 63.2
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.2e-62 244.6 405 43.7
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.2e-62 244.6 366 44.3
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 2.0e-62 243.8 374 43.0
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.6e-62 243.4 405 43.2
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 4.4e-62 242.7 361 46.0
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 5.8e-62 242.3 361 46.0
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 5.8e-62 242.3 381 41.7
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 7.6e-62 241.9 375 44.5
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 3.8e-61 239.6 369 44.2
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 8.4e-61 238.4 359 45.4
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 1.1e-60 238.0 208 60.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 1.6e-59 234.2 363 43.0
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 6.0e-59 232.3 360 41.4
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 1.3e-58 231.1 375 41.9
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.7e-58 230.7 405 42.0
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 1.7e-58 230.7 374 44.1
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 3.9e-58 229.6 355 44.8
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 8.7e-58 228.4 358 42.5
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 8.7e-58 228.4 344 43.0
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 5.6e-57 225.7 349 43.0
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 9.6e-57 224.9 353 42.8
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 9.6e-57 224.9 395 40.3
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 1.3e-56 224.6 383 41.3
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 4.8e-56 222.6 368 39.9
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 6.2e-56 222.2 375 39.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 8.1e-56 221.9 365 41.4
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.1e-55 221.5 208 54.8
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 5.3e-55 219.2 400 41.2
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 6.9e-55 218.8 390 42.3
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 6.9e-55 218.8 361 43.2
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 9.0e-55 218.4 372 41.1
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 2.6e-54 216.9 372 40.1
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 3.4e-54 216.5 373 39.4
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 1.3e-53 214.5 373 39.1
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 1.3e-53 214.5 374 38.5
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 2.2e-53 213.8 368 39.1
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 2.9e-53 213.4 373 38.9
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 6.4e-53 212.2 209 57.4
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 8.4e-53 211.8 361 41.3
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 1.9e-52 210.7 366 38.8
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 1.9e-52 210.7 366 38.8
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 1.9e-52 210.7 366 38.8
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 3.2e-52 209.9 343 39.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 9.3e-52 208.4 363 40.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 9.3e-52 208.4 362 40.1
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 3.5e-51 206.5 208 55.3
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 8.7e-50 201.8 371 37.7
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 1.9e-49 200.7 374 37.7
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.5e-49 200.3 351 39.3
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 7.4e-49 198.7 353 38.2
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 4.8e-48 196.1 336 43.2
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.9e-44 184.1 179 56.4
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.5e-44 183.7 372 36.6
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 5.5e-44 182.6 377 35.0
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 7.1e-44 182.2 359 36.5
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 9.3e-44 181.8 379 35.1
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 2.1e-43 180.6 207 47.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 3.0e-42 176.8 376 37.0
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 1.5e-41 174.5 350 37.1
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 9.6e-41 171.8 150 64.0
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 4.2e-36 156.4 176 54.0
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.0e-34 151.8 206 42.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.8e-34 151.0 330 36.1
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.2e-32 144.1 247 38.9
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.9e-29 133.7 106 65.1
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 5.0e-29 132.9 221 38.9
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 8.8e-26 122.1 206 37.4
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 8.2e-24 115.5 205 34.6
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-20 105.1 59 83.1
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 7.7e-14 82.4 87 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 3.8e-13 80.1 110 42.7
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 3.9e-10 70.1 240 27.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.0e-09 67.8 120 40.8
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.6e-09 67.4 84 50.0


User provided reference genes

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