Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.8e-151 538.5 259 100.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 6.8e-137 490.7 259 90.7
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 3.0e-121 438.7 259 81.1
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.0e-121 438.3 259 81.1
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-120 436.4 259 80.7
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 5.8e-112 407.9 258 74.4
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 4.9e-111 404.8 258 74.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 4.6e-109 398.3 260 72.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 6.6e-108 394.4 260 71.9
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 6.6e-108 394.4 259 73.0
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 4.3e-107 391.7 258 72.1
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.3e-107 391.7 257 70.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 8.1e-106 387.5 257 69.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.3e-105 386.0 257 70.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-104 383.6 259 68.0
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 5.8e-104 381.3 258 68.6
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.9e-103 378.3 262 71.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 4.1e-102 375.2 260 68.8
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.6e-101 371.7 257 68.9
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 7.8e-101 370.9 259 67.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 3.9e-100 368.6 259 67.2
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.5e-99 366.7 261 68.2
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.3e-99 365.5 259 66.8
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 7.3e-99 364.4 257 67.7
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 9.5e-99 364.0 259 68.3
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.8e-98 362.5 259 65.6
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 8.1e-98 360.9 258 64.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 8.1e-98 360.9 259 67.2
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.4e-97 360.1 255 66.7
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.8e-97 357.8 262 66.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 6.8e-97 357.8 256 66.8
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.5e-96 356.7 258 64.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.6e-96 355.9 262 65.6
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-96 355.9 262 65.6
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 4.4e-96 355.1 279 62.4
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.8e-96 354.8 259 66.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 9.9e-96 354.0 257 67.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.7e-95 353.2 258 64.7
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.7e-95 353.2 262 65.6
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.7e-95 353.2 257 65.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.2e-95 352.8 259 65.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.9e-95 351.7 262 66.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 6.4e-95 351.3 296 58.4
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.4e-95 351.3 259 64.5
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.1e-94 350.5 259 62.9
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-94 350.5 271 62.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 2.4e-94 349.4 258 64.7
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.4e-94 349.4 259 65.6
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.2e-94 349.0 257 62.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.2e-94 348.6 257 64.2
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 4.2e-94 348.6 257 65.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 9.2e-94 347.4 259 64.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.2e-93 347.1 258 63.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-93 345.5 280 59.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.6e-93 345.1 238 66.8
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 6.0e-93 344.7 261 62.8
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.0e-92 344.0 261 63.2
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.0e-92 344.0 254 65.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-92 342.8 258 61.6
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.6e-92 341.3 251 64.9
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.7e-92 340.9 209 74.6
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-91 340.5 208 74.5
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-91 340.1 257 63.4
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.5e-91 340.1 258 62.4
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.9e-91 339.7 221 72.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.3e-91 339.0 260 62.3
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 9.6e-91 337.4 220 70.5
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.8e-89 333.2 257 61.9
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 4.0e-89 332.0 262 62.6
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 6.9e-89 331.3 254 63.4
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 6.9e-89 331.3 260 60.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.0e-89 330.9 229 64.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.0e-88 329.7 238 65.5
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.6e-88 327.8 241 64.7
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 9.9e-88 327.4 299 55.2
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.3e-87 327.0 259 59.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.2e-87 326.2 255 62.0
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 4.9e-87 325.1 289 56.7
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.4e-86 323.6 258 60.5
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 5.4e-86 321.6 262 63.0
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.3e-84 316.2 235 63.8
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 5.1e-84 315.1 257 59.1
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 8.7e-84 314.3 237 62.0
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-83 313.5 237 61.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.3e-82 310.5 326 49.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 4.0e-81 305.4 257 59.9
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.5e-80 303.5 200 70.0
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 9.9e-80 300.8 278 52.2
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-79 300.4 257 58.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.7e-79 300.1 239 59.4
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.9e-78 296.6 260 56.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.4e-78 296.2 219 61.6
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.2e-78 295.4 274 54.4
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.1e-77 293.1 228 57.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 3.0e-76 289.3 263 52.1
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.1e-76 288.5 213 64.3
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.7e-74 282.3 300 50.0
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.0e-73 277.7 200 65.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.2e-72 277.3 262 54.6
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.9e-72 274.2 261 52.5
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.7e-71 273.5 224 59.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-67 260.8 182 67.6
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 6.9e-65 251.5 230 56.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.5e-64 250.4 183 61.7
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 2.0e-64 250.0 264 51.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-63 247.3 187 64.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.3e-60 236.5 186 61.3
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 3.0e-60 236.1 223 55.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 3.1e-57 226.1 266 44.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.2e-55 219.9 176 59.7
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.9e-55 219.5 216 53.7
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.9e-55 219.5 196 53.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 3.2e-54 216.1 185 56.2
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 2.3e-52 209.9 212 47.2
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.9e-52 209.1 169 60.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 5.1e-52 208.8 191 53.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.5e-51 207.2 149 66.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 2.0e-51 206.8 166 62.0
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.3e-50 204.1 189 50.8
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.2e-50 201.4 147 61.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.4e-49 199.9 141 66.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.4e-49 199.9 223 48.0
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.9e-48 195.3 130 69.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 5.0e-47 192.2 251 43.4
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.8e-44 181.4 151 57.0
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.8e-41 173.7 115 71.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.6e-40 169.9 126 61.1
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.8e-39 166.0 130 60.8
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.5e-35 154.1 199 42.2
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.8e-34 149.1 240 38.3
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.4e-33 147.5 115 56.5
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.4e-33 146.7 220 38.2
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 88 72.7
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.5e-31 138.7 88 71.6
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.5e-31 138.3 88 71.6
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-30 136.7 88 69.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.5e-30 136.7 150 51.3
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 9.4e-30 134.8 353 28.3
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-29 134.4 114 57.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 8.8e-28 128.3 258 33.7
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.8e-26 122.5 97 59.8
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.7e-24 116.7 223 33.2
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.1e-22 111.3 68 76.5
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-22 110.9 72 69.4
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 3.2e-22 109.8 75 64.0
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.7e-21 105.9 81 59.3
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.1e-21 105.5 66 68.2
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-20 104.4 66 65.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-20 104.0 66 66.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.0e-19 100.5 63 68.3
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 8.3e-18 95.1 90 54.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 8.3e-18 95.1 75 57.3
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 8.6e-15 85.1 83 53.0
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-13 78.6 83 53.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 8.9e-12 75.1 58 58.6
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 3.4e-11 73.2 83 47.0
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 3.7e-10 69.7 51 58.8
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 9.2e-09 65.1 36 77.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.0e-07 61.6 71 43.7
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 3.9e-07 59.7 137 27.7
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.5e-06 57.8 75 49.3


User provided reference genes

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