Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.1e-67 258.8 127 100.0
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 8.9e-66 253.4 127 96.9
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 1.5e-65 252.7 127 97.6
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 3.4e-65 251.5 125 96.8
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.3e-64 249.6 127 95.3
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.7e-64 249.2 127 95.3
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 6.4e-64 247.3 125 94.4
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 8.3e-64 246.9 125 93.6
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.4e-63 245.4 125 92.8
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.1e-63 244.6 127 94.5
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 5.4e-63 244.2 127 91.3
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 7.1e-63 243.8 123 94.3
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.1e-62 242.3 125 92.0
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 2.7e-62 241.9 126 92.1
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 4.6e-62 241.1 126 89.7
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 4.6e-62 241.1 127 90.6
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 4.6e-62 241.1 127 90.6
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 7.8e-62 240.4 127 89.8
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 7.8e-62 240.4 127 88.2
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 7.8e-62 240.4 125 91.2
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 1.0e-61 240.0 125 90.4
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.0e-61 240.0 127 89.8
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.7e-61 239.2 125 91.2
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 2.3e-61 238.8 126 90.5
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 3.9e-61 238.0 127 87.4
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.9e-61 238.0 125 89.6
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 3.9e-61 238.0 126 87.3
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 3.9e-61 238.0 127 89.0
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 5.1e-61 237.7 127 89.0
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 5.1e-61 237.7 127 89.0
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 5.1e-61 237.7 127 90.6
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 6.6e-61 237.3 127 89.8
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 1.1e-60 236.5 127 88.2
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.5e-60 236.1 127 87.4
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.5e-60 236.1 127 88.2
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 1.5e-60 236.1 127 88.2
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 1.9e-60 235.7 123 88.6
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 2.5e-60 235.3 127 87.4
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 3.3e-60 235.0 126 88.9
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 3.3e-60 235.0 127 86.6
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 4.3e-60 234.6 126 88.1
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 4.3e-60 234.6 126 88.9
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.3e-60 234.6 121 91.7
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.3e-60 234.6 121 91.7
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 91.2
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 87.2
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 5.6e-60 234.2 127 89.8
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 87.2
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 7.3e-60 233.8 124 91.1
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 7.3e-60 233.8 127 87.4
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 88.2
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 9.5e-60 233.4 125 88.8
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 9.5e-60 233.4 125 91.2
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 1.2e-59 233.0 127 85.8
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 1.2e-59 233.0 127 86.6
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 1.6e-59 232.6 127 86.6
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 1.6e-59 232.6 128 86.7
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 1.6e-59 232.6 127 85.0
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 126 88.1
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.1e-59 232.3 123 90.2
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 2.8e-59 231.9 124 89.5
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 3.6e-59 231.5 126 88.1
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 3.6e-59 231.5 126 84.9
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 6.2e-59 230.7 125 85.6
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 8.1e-59 230.3 123 88.6
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 1.1e-58 229.9 125 88.0
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 1.1e-58 229.9 125 88.0
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.1e-58 229.9 123 87.8
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.1e-58 229.9 127 87.4
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 87.3
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 87.3
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 87.3
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.4e-58 229.6 127 88.2
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 87.3
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 1.8e-58 229.2 125 89.6
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 87.8
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.1e-58 228.4 123 86.2
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 4.0e-58 228.0 125 84.8
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 87.8
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 87.8
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 85.4
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 6.8e-58 227.3 127 84.3
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 8.9e-58 226.9 126 84.1
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 8.9e-58 226.9 127 82.7
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 85.4
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 1.5e-57 226.1 125 84.0
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.0e-57 225.7 127 83.5
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 2.0e-57 225.7 123 83.7
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 2.6e-57 225.3 127 83.5
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 85.7
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 81.0
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 87.0
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 5.8e-57 224.2 126 83.3
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 9.9e-57 223.4 123 85.4
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 1.3e-56 223.0 121 87.6
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 86.2
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.7e-56 222.6 127 84.3
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.9e-56 221.9 115 89.6
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 2.9e-56 221.9 123 82.1
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 3.8e-56 221.5 123 85.4
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 4.9e-56 221.1 126 83.3
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.4e-55 219.5 123 84.6
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 2.4e-55 218.8 126 82.5
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 2.4e-55 218.8 122 82.0
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 2.4e-55 218.8 123 84.6
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 2.4e-55 218.8 124 83.1
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 82.1
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 7.1e-55 217.2 126 80.2
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 82.9
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 3.5e-54 214.9 125 80.0
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 4.6e-54 214.5 115 86.1
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 3.9e-53 211.5 124 81.5
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 3.9e-53 211.5 125 77.6
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 6.6e-53 210.7 125 82.4
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 6.6e-53 210.7 112 89.3
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 8.7e-53 210.3 110 90.0
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 3.3e-52 208.4 125 78.4
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 7.3e-52 207.2 107 91.6
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.2e-51 206.5 107 90.7
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.2e-51 206.5 112 87.5
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.1e-50 203.4 118 82.2
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 2.4e-50 202.2 112 84.8
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 6.9e-50 200.7 115 84.3
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.0e-49 199.1 103 92.2
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 9.9e-49 196.8 101 96.0
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.2e-48 195.7 126 76.2
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.9e-48 194.5 124 78.2
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.9e-47 192.6 111 83.8
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 3.5e-46 188.3 134 70.1
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 6.0e-46 187.6 124 68.5
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 4.3e-44 181.4 102 89.2
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.6e-43 179.5 98 85.7
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.8e-43 178.7 98 84.7
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 8.1e-43 177.2 90 91.1
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.1e-42 175.3 98 86.7
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 9.0e-42 173.7 102 82.4
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 2.2e-40 169.1 120 66.7
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 9.3e-39 163.7 134 65.7
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 2.1e-38 162.5 124 60.5
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.1e-38 162.5 120 62.5
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.7e-38 162.2 88 80.7
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 6.9e-34 147.5 69 98.6
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 3.8e-32 141.7 120 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 8.4e-32 140.6 122 56.6
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.4e-31 139.0 127 54.3
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.2e-27 124.0 114 57.9
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.4e-26 122.5 108 58.3
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 2.0e-25 119.4 57 91.2
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.2e-24 115.9 62 93.5
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 1.0e-21 107.1 82 54.9
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 5.1e-21 104.8 126 44.4
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 8.7e-21 104.0 79 55.7
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 3.3e-20 102.1 105 48.6
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.9e-16 89.0 47 89.4
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 1.3e-11 73.6 35 97.1
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 4.5e-09 65.1 32 84.4
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 1.4e-07 60.1 35 74.3
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 9.4e-07 57.4 33 72.7


User provided reference genes

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