Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G113100 Theobroma cacao HOM05D002028 ORTHO05D409271 4.8e-105 384.4 184 100.0
Hma1.2p1_0002F.1_g003380 Hydrangea macrophylla HOM05D002028 ORTHO05D002474 1.7e-17 93.6 201 39.3
Duzib150G1690 Durio zibethinus HOM05D002028 ORTHO05D002474 2.2e-17 93.2 201 38.3
Thecc.09G065800 Theobroma cacao HOM05D002028 ORTHO05D002474 2.2e-17 93.2 201 39.8
PGR119G0989 Punica granatum HOM05D002028 ORTHO05D002474 5.0e-17 92.0 198 36.9
CsaV3_6G031840 Cucumis sativus L. HOM05D002028 ORTHO05D002474 8.5e-17 91.3 198 35.9
MELO3C011497.2 Cucumis melo HOM05D002028 ORTHO05D002474 1.1e-16 90.9 201 36.8
Atru.chr7.1819 Acer truncatum HOM05D002028 ORTHO05D002474 1.4e-16 90.5 193 37.8
CiPaw.04G076800 Carya illinoinensis HOM05D002028 ORTHO05D002474 1.4e-16 90.5 196 38.8
CSS0013735 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 1.9e-16 90.1 196 36.7
CSS0037664 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 1.9e-16 90.1 196 36.7
Gohir.A06G080600 Gossypium hirsutum HOM05D002028 ORTHO05D002474 2.5e-16 89.7 198 37.4
Gorai.010G093200 Gossypium raimondii HOM05D002028 ORTHO05D002474 2.5e-16 89.7 198 37.4
Dinv29527 Davidia involucrata HOM05D002028 ORTHO05D002474 3.2e-16 89.4 198 36.4
ClCG08G009720 Citrullus lanatus HOM05D002028 ORTHO05D002474 5.5e-16 88.6 211 35.5
COL.COLO4_21163 Corchorus olitorius HOM05D002028 ORTHO05D002474 5.5e-16 88.6 196 37.8
Gohir.D06G080100 Gossypium hirsutum HOM05D002028 ORTHO05D002474 7.2e-16 88.2 198 37.4
Nitab4.5_0000138g0250 Nicotiana tabacum HOM05D002028 ORTHO05D002474 9.4e-16 87.8 195 36.9
Peaxi162Scf00368g00814 Petunia axillaris HOM05D002028 ORTHO05D002474 9.4e-16 87.8 195 35.9
Actinidia09349 Actinidia chinensis HOM05D002028 ORTHO05D002474 1.2e-15 87.4 198 36.9
Eucgr.C00745 Eucalyptus grandis HOM05D002028 ORTHO05D002474 1.2e-15 87.4 198 36.4
Rhsim03G0017900 Rhododendron simsii HOM05D002028 ORTHO05D002474 1.2e-15 87.4 198 36.9
Duzib168G0204 Durio zibethinus HOM05D002028 ORTHO05D002474 1.6e-15 87.0 201 37.3
MSTRG.13980 Avicennia marina HOM05D002028 ORTHO05D002474 2.1e-15 86.7 197 36.0
Nitab4.5_0000389g0120 Nicotiana tabacum HOM05D002028 ORTHO05D002474 2.1e-15 86.7 194 37.6
Migut.A00328 Erythranthe guttata HOM05D002028 ORTHO05D002474 2.7e-15 86.3 203 36.9
Cc03_g10730 Coffea canephora HOM05D002028 ORTHO05D002474 3.6e-15 85.9 203 35.5
Oeu015824.1 Olea europaea HOM05D002028 ORTHO05D002474 3.6e-15 85.9 201 36.8
Migut.E01468 Erythranthe guttata HOM05D002028 ORTHO05D002474 4.7e-15 85.5 193 36.3
Lj3C81T0 Lonicera japonica HOM05D002028 ORTHO05D002474 4.7e-15 85.5 197 36.5
Oeu015825.1 Olea europaea HOM05D002028 ORTHO05D002474 4.7e-15 85.5 201 36.8
CAN.G215.15 Capsicum annuum HOM05D002028 ORTHO05D002474 1.0e-14 84.3 193 37.3
CiPaw.04G076700 Carya illinoinensis HOM05D002028 ORTHO05D002474 1.0e-14 84.3 196 36.2
QL05p010597 Quercus lobata HOM05D002028 ORTHO05D002474 1.0e-14 84.3 196 35.7
QL07p047387 Quercus lobata HOM05D002028 ORTHO05D002474 1.0e-14 84.3 196 35.7
Haze_13632 Corylus avellana HOM05D002028 ORTHO05D002474 1.4e-14 84.0 196 36.2
Prupe.1G401700 Prunus persica HOM05D002028 ORTHO05D002474 1.4e-14 84.0 198 33.8
CAN.G809.57 Capsicum annuum HOM05D002028 ORTHO05D002474 1.8e-14 83.6 197 35.0
Cfa023532 Carpinus fangiana HOM05D002028 ORTHO05D002474 1.8e-14 83.6 196 36.2
Nitab4.5_0004228g0040 Nicotiana tabacum HOM05D002028 ORTHO05D002474 1.8e-14 83.6 203 36.0
Sopen02g010690 Solanum pennellii HOM05D002028 ORTHO05D002474 2.3e-14 83.2 193 34.7
Lsat_1_v5_gn_9_42821 Lactuca sativa HOM05D002028 ORTHO05D002474 3.0e-14 82.8 195 34.4
Oeu032503.1 Olea europaea HOM05D002028 ORTHO05D002474 3.0e-14 82.8 201 34.8
Solyc02g032330.3 Solanum lycopersicum HOM05D002028 ORTHO05D002474 3.0e-14 82.8 193 35.8
Glyma.07G107800 Glycine max HOM05D002028 ORTHO05D002474 3.9e-14 82.4 196 34.2
Solyc02g081730.3 Solanum lycopersicum HOM05D002028 ORTHO05D002474 3.9e-14 82.4 197 34.5
Sopen02g026330 Solanum pennellii HOM05D002028 ORTHO05D002474 3.9e-14 82.4 197 34.5
PGSC0003DMG400007309 Solanum tuberosum HOM05D002028 ORTHO05D002474 3.9e-14 82.4 195 35.9
MD08G1046500 Malus domestica HOM05D002028 ORTHO05D002474 5.1e-14 82.0 196 35.2
Nitab4.5_0003602g0060 Nicotiana tabacum HOM05D002028 ORTHO05D002474 5.1e-14 82.0 197 35.5
BcaB08g35278 Brassica carinata HOM05D002028 ORTHO05D002474 6.7e-14 81.6 194 34.0
CSS0003399 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 8.8e-14 81.3 197 34.0
CANSAT54G1311 Cannabis sativa HOM05D002028 ORTHO05D002474 8.8e-14 81.3 194 34.5
Lj3C1011G3 Lonicera japonica HOM05D002028 ORTHO05D002474 8.8e-14 81.3 167 36.5
Hund07042 Selenicereus undatus HOM05D002028 ORTHO05D002474 8.8e-14 81.3 201 34.8
SGA_v2.0_scaffold147G36314 Striga asiatica HOM05D002028 ORTHO05D002474 8.8e-14 81.3 201 37.3
vmacro09583 Vaccinium macrocarpon HOM05D002028 ORTHO05D002474 8.8e-14 81.3 201 36.3
SalBow4G0515 Salvia bowleyana HOM05D002028 ORTHO05D002474 1.1e-13 80.9 196 35.2
Sed0012590 Sechium edule HOM05D002028 ORTHO05D002474 1.1e-13 80.9 196 33.2
CSS0001991 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 2.0e-13 80.1 198 35.9
Lj1g0002250 Lotus japonicus HOM05D002028 ORTHO05D002474 2.0e-13 80.1 193 34.2
TAR468G0003 Trochodendron aralioides HOM05D002028 ORTHO05D002474 2.0e-13 80.1 198 33.8
TPR.G21434 Trifolium pratense HOM05D002028 ORTHO05D002474 2.6e-13 79.7 196 34.2
MSTRG.25846 Avicennia marina HOM05D002028 ORTHO05D002474 3.3e-13 79.3 125 42.4
EL10Ac9g21970 Beta vulgaris HOM05D002028 ORTHO05D002474 3.3e-13 79.3 201 34.8
Glyma.03G002500 Glycine max HOM05D002028 ORTHO05D002474 3.3e-13 79.3 193 33.7
Manes.16G087200 Manihot esculenta HOM05D002028 ORTHO05D002474 3.3e-13 79.3 195 33.3
Potri.006G218400 Populus trichocarpa HOM05D002028 ORTHO05D002474 3.3e-13 79.3 201 32.8
Aa31LG5G9540 Aethionema arabicum HOM05D002028 ORTHO05D002474 4.4e-13 79.0 204 33.3
arahy.Tifrunner.gnm1.ann1.QH0XVM Arachis hypogaea HOM05D002028 ORTHO05D002474 4.4e-13 79.0 196 35.2
BcaC08g42942 Brassica carinata HOM05D002028 ORTHO05D002474 4.4e-13 79.0 197 33.5
DCAR_003728 Daucus carota HOM05D002028 ORTHO05D002474 4.4e-13 79.0 122 39.3
Medtr3g105440 Medicago truncatula HOM05D002028 ORTHO05D002474 4.4e-13 79.0 193 35.8
THA.LOC104804450 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 4.4e-13 79.0 192 34.9
Sabra06G0168400 Salix brachista HOM05D002028 ORTHO05D002474 5.7e-13 78.6 201 32.8
A09p55330 Brassica napus HOM05D002028 ORTHO05D002474 7.4e-13 78.2 194 33.5
BolC8t51402H Brassica oleracea HOM05D002028 ORTHO05D002474 7.4e-13 78.2 194 33.5
Lalb_Chr08g0244671 Lupinus albus HOM05D002028 ORTHO05D002474 7.4e-13 78.2 196 34.7
ECA232G0089 Erigeron canadensis HOM05D002028 ORTHO05D002474 9.7e-13 77.8 193 32.1
Psat0s3617g0080 Pisum sativum HOM05D002028 ORTHO05D002474 9.7e-13 77.8 196 33.7
RcHm_v2.0_Chr6g0304791 Rosa chinensis HOM05D002028 ORTHO05D002474 9.7e-13 77.8 200 34.5
AL4G18840 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 1.7e-12 77.0 194 32.0
arahy.Tifrunner.gnm1.ann1.ZB69EK Arachis hypogaea HOM05D002028 ORTHO05D002474 1.7e-12 77.0 196 34.7
A10p06480 Brassica napus HOM05D002028 ORTHO05D002474 1.7e-12 77.0 198 32.3
BraA10t42908Z Brassica rapa HOM05D002028 ORTHO05D002474 1.7e-12 77.0 198 32.3
VMungo1309G0101 Vigna mungo HOM05D002028 ORTHO05D002474 1.7e-12 77.0 196 32.7
VMungo1309G2976 Vigna mungo HOM05D002028 ORTHO05D002474 1.7e-12 77.0 196 33.2
Peaxi162Scf00198g01529 Petunia axillaris HOM05D002028 ORTHO05D002474 2.2e-12 76.6 118 44.1
arahy.Tifrunner.gnm1.ann1.CT5VFU Arachis hypogaea HOM05D002028 ORTHO05D002474 2.8e-12 76.3 196 33.7
BraA09t40936Z Brassica rapa HOM05D002028 ORTHO05D002474 2.8e-12 76.3 194 33.0
ECA247G2946 Erigeron canadensis HOM05D002028 ORTHO05D002474 2.8e-12 76.3 195 32.3
Thhalv10001949m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 2.8e-12 76.3 194 33.0
HanXRQChr02g0046911 Helianthus annuus HOM05D002028 ORTHO05D002474 2.8e-12 76.3 196 34.2
AT2G26260 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 3.7e-12 75.9 195 31.8
Sp4g06500 Schrenkiella parvula HOM05D002028 ORTHO05D002474 3.7e-12 75.9 194 32.0
THA.LOC104819911 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 3.7e-12 75.9 202 35.1
Ah.05g168720 Amaranthus hybridus HOM05D002028 ORTHO05D002474 4.8e-12 75.5 201 33.3
FAN20G3146 Fragaria x ananassa HOM05D002028 ORTHO05D002474 4.8e-12 75.5 200 33.0
SalBow8G3331 Salvia bowleyana HOM05D002028 ORTHO05D002474 4.8e-12 75.5 196 32.1
CARHR036900 Cardamine hirsuta HOM05D002028 ORTHO05D002474 6.3e-12 75.1 116 44.8
FvH4_2g36970 Fragaria vesca HOM05D002028 ORTHO05D002474 6.3e-12 75.1 200 33.0
Lj3A82T19 Lonicera japonica HOM05D002028 ORTHO05D002474 6.3e-12 75.1 123 41.5
Lalb_Chr23g0268071 Lupinus albus HOM05D002028 ORTHO05D002474 6.3e-12 75.1 192 33.3
arahy.Tifrunner.gnm1.ann1.22JQPB Arachis hypogaea HOM05D002028 ORTHO05D002474 8.2e-12 74.7 196 33.2
Thhalv10011495m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 8.2e-12 74.7 116 41.4
Glyma.06G058200 Glycine max HOM05D002028 ORTHO05D002474 8.2e-12 74.7 202 32.2
Nn3g20138 Nelumbo nucifera HOM05D002028 ORTHO05D002474 8.2e-12 74.7 203 35.0
TWI34G0285 Tripterygium wilfordii HOM05D002028 ORTHO05D002474 8.2e-12 74.7 196 32.1
Lsat_1_v5_gn_1_4680 Lactuca sativa HOM05D002028 ORTHO05D002474 1.1e-11 74.3 195 32.3
Phvul.009G084200 Phaseolus vulgaris HOM05D002028 ORTHO05D002474 1.1e-11 74.3 196 30.6
FAN15G1351 Fragaria x ananassa HOM05D002028 ORTHO05D002474 1.8e-11 73.6 200 32.5
Sp1g34440 Schrenkiella parvula HOM05D002028 ORTHO05D002474 1.8e-11 73.6 120 43.3
BcaB07g33844 Brassica carinata HOM05D002028 ORTHO05D002474 3.1e-11 72.8 121 36.4
Ca_15805_v3 Cicer arietinum L. HOM05D002028 ORTHO05D002474 4.1e-11 72.4 196 33.2
unitig_748.g8197 Utricularia gibba HOM05D002028 ORTHO05D002474 4.1e-11 72.4 198 30.8
MBI13_g13883_MAGBIO Magnolia biondii HOM05D002028 ORTHO05D002474 9.1e-11 71.2 201 34.3
BcaC07g37221 Brassica carinata HOM05D002028 ORTHO05D002474 1.2e-10 70.9 177 31.6
C08p38270 Brassica napus HOM05D002028 ORTHO05D002474 1.6e-10 70.5 184 32.1
DCAR_001245 Daucus carota HOM05D002028 ORTHO05D002474 1.6e-10 70.5 198 33.3
Aqoxy5G00695 Aquilegia oxysepala HOM05D002028 ORTHO05D002474 2.0e-10 70.1 201 33.3
AL1G53470 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 2.0e-10 70.1 121 40.5
AT1G47290 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 2.0e-10 70.1 118 39.0
Sc17g0000190 Simmondsia chinensis HOM05D002028 ORTHO05D002474 2.0e-10 70.1 120 40.0
Ah.08g210790 Amaranthus hybridus HOM05D002028 ORTHO05D002249 2.6e-10 69.7 196 29.6
BcaC07g40831 Brassica carinata HOM05D002028 ORTHO05D002474 2.6e-10 69.7 184 32.1
Carub.0001s3610 Capsella rubella HOM05D002028 ORTHO05D002474 2.6e-10 69.7 121 40.5
THA.LOC104819910 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 2.6e-10 69.7 203 33.0
CAN.G809.58 Capsicum annuum HOM05D002028 ORTHO05D002474 3.5e-10 69.3 162 32.7
Cpa.g.sc82.10 Carica papaya HOM05D002028 ORTHO05D002474 3.5e-10 69.3 195 30.8
DCAR_014536 Daucus carota HOM05D002028 ORTHO05D002474 4.5e-10 68.9 195 33.3
Carub.0004s0612 Capsella rubella HOM05D002028 ORTHO05D002474 7.7e-10 68.2 119 38.7
FAN27G1780 Fragaria x ananassa HOM05D002028 ORTHO05D002474 7.7e-10 68.2 200 32.0
HPP92_001319 Vanilla planifolia HOM05D002028 ORTHO05D002474 7.7e-10 68.2 196 31.6
BolC6t35312H Brassica oleracea HOM05D002028 ORTHO05D002474 1.3e-09 67.4 121 38.0
PSO063G0789 Papaver somniferum HOM05D002028 ORTHO05D002474 1.1e-08 64.3 198 29.8
PSO782G0154 Papaver somniferum HOM05D002028 ORTHO05D002474 1.5e-08 63.9 198 29.3
Ciclev10007884m.g Citrus clementina HOM05D002028 ORTHO05D002474 1.9e-08 63.5 124 38.7
PSO063G7639 Papaver somniferum HOM05D002028 ORTHO05D002474 1.9e-08 63.5 201 29.9
Zm00001eb019510 Zea mays HOM05D002028 ORTHO05D002474 3.2e-08 62.8 120 35.8
C06p01850 Brassica napus HOM05D002028 ORTHO05D002474 5.5e-08 62.0 121 37.2
PSO421G0064 Papaver somniferum HOM05D002028 ORTHO05D002474 1.2e-07 60.8 198 30.3
CDE06G0271 Ceratophyllum demersum HOM05D002028 ORTHO05D002474 4.7e-07 58.9 68 47.1
vmacro22366 Vaccinium macrocarpon HOM05D002028 ORTHO05D002474 8.0e-07 58.2 34 76.5
Os03g0404800 Oryza sativa ssp. japonica HOM05D002028 ORTHO05D002474 3.0e-06 56.2 126 34.1
Os03g0405000 Oryza sativa ssp. japonica HOM05D002028 ORTHO05D002474 4.0e-06 55.8 194 28.4


User provided reference genes

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