Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 7.6e-83 310.5 158 100.0
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 8.8e-55 217.2 147 81.0
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 4.8e-53 211.5 158 74.7
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 5.0e-42 174.9 110 81.8
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.7e-37 158.7 159 54.7
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.8e-36 156.4 162 59.9
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 3.5e-35 152.1 162 58.6
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 7.3e-33 144.4 173 49.7
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 2.8e-32 142.5 169 47.3
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 3.7e-29 132.1 163 53.4
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 8.3e-29 131.0 165 47.3
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 4.1e-28 128.6 168 47.6
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.6e-27 125.2 167 46.1
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 2.3e-26 122.9 157 48.4
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 7.3e-25 117.9 158 47.5
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 9.5e-25 117.5 158 47.5
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 9.5e-25 117.5 158 48.1
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 2.8e-24 115.9 153 47.1
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 3.6e-24 115.5 159 47.8
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 6.2e-24 114.8 157 45.9
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 3.4e-22 109.0 177 43.5
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 5.8e-22 108.2 162 43.8
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 2.2e-21 106.3 156 42.9
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 2.9e-21 105.9 165 42.4
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 8.3e-21 104.4 167 42.5
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 1.4e-20 103.6 164 40.2
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 4.1e-20 102.1 170 44.1
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 4.1e-20 102.1 167 41.9
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 5.4e-20 101.7 148 44.6
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 7.0e-20 101.3 171 40.4
Gohir.A02G134800 Gossypium hirsutum HOM05D007384 ORTHO05D008511 9.2e-20 100.9 134 51.5
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 7.8e-19 97.8 157 43.3
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 1.7e-18 96.7 161 38.5
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 1.7e-18 96.7 164 41.5
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 1.7e-18 96.7 169 40.2
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 6.6e-18 94.7 150 40.7
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 8.6e-18 94.4 177 40.1
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 8.6e-18 94.4 153 41.2
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 8.6e-18 94.4 153 41.2
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.1e-17 94.0 153 39.9
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 3.3e-17 92.4 158 41.1
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 4.3e-17 92.0 179 38.5
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 9.5e-17 90.9 163 39.9
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 9.5e-17 90.9 165 40.0
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 9.5e-17 90.9 165 37.6
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 9.5e-17 90.9 148 40.5
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 1.6e-16 90.1 178 39.3
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 3.6e-16 89.0 170 41.2
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 1.1e-15 87.4 162 40.1
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 1.4e-15 87.0 172 38.4
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 1.8e-15 86.7 165 34.5
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 2.3e-15 86.3 165 34.5
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 3.1e-15 85.9 171 35.1
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 6.8e-15 84.7 166 36.7
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 1.2e-14 84.0 152 40.8
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 2.6e-14 82.8 162 37.0
Gohir.D10G101900 Gossypium hirsutum HOM05D007384 ORTHO05D008511 3.4e-14 82.4 97 53.6
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.4e-14 82.4 159 34.6
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.4e-14 82.4 161 34.8
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 7.5e-14 81.3 162 35.8
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 9.8e-14 80.9 166 39.2
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 1.3e-13 80.5 162 35.8
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 2.2e-13 79.7 162 35.8
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 2.9e-13 79.3 158 34.8
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 2.9e-13 79.3 170 35.9
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 8.3e-13 77.8 83 51.8
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 1.4e-12 77.0 161 33.5
Sabra07G0068500 Salix brachista HOM05D007384 ORTHO05D008511 1.9e-12 76.6 114 47.4
Nn5g28918 Nelumbo nucifera HOM05D007384 ORTHO05D008511 2.4e-12 76.3 166 36.7
QL06p032302 Quercus lobata HOM05D007384 ORTHO05D008511 4.1e-12 75.5 87 47.1
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 4.1e-12 75.5 174 37.4
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 5.4e-12 75.1 158 34.8
Gohir.D03G045701 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.2e-11 73.9 92 50.0
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 1.6e-11 73.6 167 35.9
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 2.7e-11 72.8 160 34.4
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 4.6e-11 72.0 171 33.9
Sc07g0001520 Simmondsia chinensis HOM05D007384 ORTHO05D008511 1.0e-10 70.9 159 34.0
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 1.7e-10 70.1 173 34.1
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 2.3e-10 69.7 148 38.5
Hma1.2p1_0375F.1_g138660 Hydrangea macrophylla HOM05D007384 ORTHO05D008511 3.0e-10 69.3 51 60.8
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 3.9e-10 68.9 162 33.3
Eucgr.I00328 Eucalyptus grandis HOM05D007384 ORTHO05D008511 3.9e-10 68.9 162 33.3
Oeu028527.1 Olea europaea HOM05D007384 ORTHO05D008511 3.9e-10 68.9 165 31.5
Ciclev10027326m.g Citrus clementina HOM05D007384 ORTHO05D008511 1.5e-09 67.0 86 45.3
Psat5g065520 Pisum sativum HOM05D007384 ORTHO05D008511 1.5e-09 67.0 176 30.1
PGR004G1153 Punica granatum HOM05D007384 ORTHO05D008511 1.5e-09 67.0 163 29.4
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 2.5e-09 66.2 156 32.1
BolC3t18390H Brassica oleracea HOM05D012887 ORTHO05D008511 2.5e-09 66.2 160 35.6
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 5.6e-09 65.1 158 29.7
BcaC01g02721 Brassica carinata HOM05D012887 ORTHO05D008511 5.6e-09 65.1 158 35.4
C03p61290 Brassica napus HOM05D012887 ORTHO05D008511 5.6e-09 65.1 158 35.4
BcaB02g09838 Brassica carinata HOM05D012887 ORTHO05D008511 9.5e-09 64.3 144 34.0
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 3.6e-08 62.4 154 33.1
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 6.2e-08 61.6 161 26.7
SalBow6G3892 Salvia bowleyana HOM05D007384 ORTHO05D008511 6.2e-08 61.6 152 32.2
VMungo1309G0400 Vigna mungo HOM05D007384 ORTHO05D008511 1.1e-07 60.8 170 32.4
Sp2g27960 Schrenkiella parvula HOM05D012887 ORTHO05D008511 1.4e-07 60.5 170 31.8
arahy.Tifrunner.gnm1.ann1.XNBA0B Arachis hypogaea HOM05D007384 ORTHO05D008511 2.3e-07 59.7 72 47.2
Glyma.06G146100 Glycine max HOM05D007384 ORTHO05D008511 1.5e-06 57.0 173 30.1
unitig_736.g22624 Utricularia gibba HOM05D007384 ORTHO05D008511 2.0e-06 56.6 146 30.8
Glyma.04G219700 Glycine max HOM05D007384 ORTHO05D008511 9.9e-06 54.3 77 40.3
SGA_v2.0_scaffold2G01297 Striga asiatica HOM05D007384 ORTHO05D008511 9.9e-06 54.3 162 29.6


User provided reference genes

Program Settings