Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.6e-89 332.8 176 100.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 3.5e-76 288.5 176 86.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.8e-75 285.0 176 84.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.0e-75 284.6 176 84.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.5e-74 281.2 178 84.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.2e-62 242.7 144 87.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.6e-60 236.5 175 75.4
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.6e-57 226.5 179 73.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.6e-57 226.5 179 73.7
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 6.8e-56 221.1 176 72.2
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.9e-56 220.7 169 72.8
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 188 68.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.0e-55 219.5 176 70.5
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.0e-55 219.5 172 70.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.6e-55 219.2 175 68.0
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.4e-55 218.8 188 69.1
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 3.4e-55 218.8 190 66.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 7.5e-55 217.6 173 69.4
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 9.8e-55 217.2 178 68.5
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.8e-55 217.2 186 66.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 1.7e-54 216.5 182 68.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.7e-54 215.3 174 72.4
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.7e-54 215.3 175 66.9
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.7e-54 215.3 177 69.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.9e-54 214.9 180 70.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.9e-54 214.9 173 69.4
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 8.3e-54 214.2 173 68.2
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.4e-53 213.4 172 69.8
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.4e-53 213.4 177 70.1
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.8e-53 213.0 181 65.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.8e-53 213.0 181 65.2
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.2e-53 212.2 176 68.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.1e-53 211.8 176 66.5
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 5.4e-53 211.5 172 69.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.4e-53 211.5 175 68.0
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 7.0e-53 211.1 175 64.0
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.2e-53 210.7 175 66.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.6e-52 209.9 175 67.4
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.0e-52 209.5 157 73.9
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 65.4
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.9e-52 208.0 176 65.3
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 7.8e-52 207.6 173 68.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 7.8e-52 207.6 175 66.9
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.3e-51 206.8 175 67.4
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.3e-51 206.8 133 79.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.3e-51 206.8 201 60.7
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.7e-51 206.5 172 65.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-51 206.1 176 68.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.3e-51 206.1 185 63.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.9e-51 205.3 174 65.5
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.6e-51 204.5 183 63.9
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.6e-51 204.5 183 63.9
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.6e-51 204.1 174 65.5
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 187 62.6
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.5e-50 203.4 175 66.3
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.9e-50 203.0 181 64.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 64.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.9e-50 203.0 173 64.2
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 2.5e-50 202.6 176 67.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 4.3e-50 201.8 176 67.6
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 7.3e-50 201.1 183 66.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.3e-50 201.1 174 66.7
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.3e-50 201.1 174 64.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.3e-50 201.1 175 65.7
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.3e-50 201.1 175 65.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.2e-49 200.3 181 64.1
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-49 200.3 200 59.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.2e-49 200.3 190 62.1
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-49 200.3 175 65.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.6e-49 199.9 180 63.9
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.8e-49 199.1 174 66.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.8e-49 199.1 176 63.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.8e-49 199.1 171 65.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.6e-49 198.7 177 63.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 8.0e-49 197.6 176 65.3
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.0e-49 197.6 189 60.8
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 8.0e-49 197.6 176 66.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 8.0e-49 197.6 202 61.4
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.1e-48 197.2 175 64.6
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.4e-48 196.8 174 64.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-48 196.8 179 64.8
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-48 196.8 179 64.8
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.4e-48 196.8 146 71.9
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 64.6
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 64.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 63.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.8e-48 196.4 174 64.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.3e-48 196.1 174 63.2
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.3e-48 196.1 180 64.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.1e-48 195.7 178 64.6
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.0e-48 195.3 193 59.1
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 5.2e-48 194.9 175 63.4
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 5.2e-48 194.9 186 57.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 6.8e-48 194.5 174 64.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 5.8e-47 191.4 176 64.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 7.5e-47 191.0 188 58.5
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.7e-46 189.9 174 63.8
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.7e-46 189.9 174 63.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.2e-46 189.5 186 60.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.9e-45 186.4 185 57.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.4e-45 186.0 184 61.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 5.4e-45 184.9 179 60.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-44 183.7 179 60.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.0e-44 183.0 179 59.8
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 6.0e-44 181.4 153 66.0
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-43 180.6 173 61.3
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 6.6e-43 177.9 194 57.2
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.5e-42 176.8 172 57.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.3e-42 175.6 174 60.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.6e-42 174.9 182 55.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.3e-42 174.5 111 76.6
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.8e-41 172.6 177 59.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 3.6e-41 172.2 152 63.8
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.3e-40 169.5 132 64.4
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-39 167.2 173 59.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 8.3e-38 161.0 192 51.6
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.9e-37 159.8 192 51.0
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 2.1e-36 156.4 91 84.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.3e-34 148.7 131 61.1
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.2e-33 147.1 144 60.4
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-32 142.9 133 60.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 5.2e-32 141.7 137 63.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.6e-31 137.9 103 68.9
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.2e-30 136.3 116 62.1
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.2e-28 130.6 123 56.1
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.2e-28 130.6 124 64.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.6e-28 130.2 109 59.6
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 4.6e-28 128.6 101 64.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.0e-27 127.5 101 63.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 5.1e-27 125.2 114 54.4
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.5e-26 123.6 106 60.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 4.3e-26 122.1 89 74.2
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 5.6e-26 121.7 102 60.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.6e-25 119.0 101 55.4
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.9e-24 114.8 109 56.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.6e-23 112.8 175 43.4
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 7.6e-23 111.3 115 54.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 7.6e-23 111.3 109 56.9
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.2e-21 105.9 80 62.5
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.2e-21 105.5 107 54.2
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.6e-20 103.6 91 56.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.5e-20 102.4 71 67.6
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.0e-19 100.9 123 53.7
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-19 99.4 96 62.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.7e-19 97.8 64 79.7
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.3e-18 95.9 67 74.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.3e-17 94.0 107 48.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.6e-17 93.6 98 44.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 6.2e-17 91.7 98 51.0
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 6.9e-16 88.2 159 43.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 4.5e-15 85.5 91 49.5
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 5.4e-13 78.6 131 35.1


User provided reference genes

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