Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.3e-168 596.3 301 100.0
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.8e-136 489.6 300 84.0
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.9e-128 461.8 303 78.9
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.1e-128 461.5 303 78.5
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.1e-128 461.5 303 78.5
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 9.3e-122 440.7 301 77.7
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.8e-99 365.5 325 60.0
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 6.5e-99 364.8 309 61.5
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.1e-98 364.0 313 61.3
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 8.0e-97 357.8 303 62.0
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.4e-96 357.1 310 62.6
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.8e-96 356.7 306 62.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 8.8e-96 354.4 306 64.4
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.7e-94 350.1 326 60.1
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.1e-93 345.9 308 61.4
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 4.1e-93 345.5 303 60.7
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.1e-93 345.5 312 60.9
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 5.0e-91 338.6 308 59.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 6.5e-91 338.2 306 59.8
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 6.5e-91 338.2 306 59.5
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 1.5e-90 337.0 312 59.3
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.2e-89 334.0 305 59.0
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 5.2e-88 328.6 309 57.6
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.2e-87 327.4 309 58.3
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 3.3e-87 325.9 303 57.1
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 5.7e-87 325.1 311 57.9
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 9.7e-87 324.3 310 57.7
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.8e-86 322.8 308 56.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 2.4e-85 319.7 312 55.1
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.4e-85 319.7 304 56.2
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.2e-84 317.4 306 55.6
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.6e-84 317.0 305 56.4
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.0e-84 316.6 303 55.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.7e-83 313.5 307 55.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.9e-83 312.8 303 54.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.1e-82 310.8 308 55.8
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.5e-82 310.5 353 51.0
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 9.4e-82 307.8 306 52.9
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.2e-81 307.4 309 54.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.2e-81 307.4 307 52.8
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.2e-81 307.4 309 53.1
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 2.7e-81 306.2 303 53.8
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 4.7e-81 305.4 300 55.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 6.1e-81 305.1 307 53.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 8.0e-81 304.7 306 53.6
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.4e-80 303.9 313 54.0
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.3e-80 303.1 326 51.2
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 6.8e-80 301.6 305 54.1
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 2.6e-79 299.7 309 55.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 3.4e-79 299.3 308 54.9
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 4.4e-79 298.9 312 52.9
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 5.7e-79 298.5 314 52.5
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 5.7e-79 298.5 306 53.6
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 5.7e-79 298.5 305 53.4
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.3e-78 297.4 310 52.6
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 2.2e-78 296.6 312 53.2
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 4.8e-78 295.4 299 53.5
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 8.3e-78 294.7 305 55.1
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.4e-77 293.1 303 53.8
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 3.1e-77 292.7 256 59.8
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.6e-76 290.4 318 52.2
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.7e-76 289.7 287 54.7
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 8.6e-75 284.6 302 53.6
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 5.5e-74 282.0 300 54.7
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.6e-73 279.3 313 48.6
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.7e-73 278.9 308 52.3
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-72 277.3 302 52.3
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.8e-72 276.9 379 45.1
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 5.2e-72 275.4 271 56.1
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.3e-70 270.8 295 50.8
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 2.8e-70 269.6 293 51.5
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.2e-68 264.2 288 50.7
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 5.9e-68 261.9 429 41.3
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.3e-67 260.0 199 67.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 7.3e-66 255.0 325 46.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 4.4e-63 245.7 293 48.5
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.8e-63 245.4 348 46.0
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.3e-62 244.2 308 47.1
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.9e-62 243.0 202 62.9
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 7.0e-61 238.4 329 44.4
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.2e-60 237.7 325 45.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-60 236.5 202 60.4
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 6.0e-60 235.3 187 64.2
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 7.8e-60 235.0 306 44.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 6.6e-59 231.9 309 47.2
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.5e-58 230.7 307 44.3
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.5e-58 230.7 188 61.2
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 4.3e-58 229.2 302 47.0
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.9e-53 213.8 310 42.3
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.4e-53 213.4 190 57.4
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 5.4e-53 212.2 331 42.9
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-52 209.9 256 49.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.8e-48 197.2 327 39.8
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.1e-48 196.4 295 43.7
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.4e-47 193.0 336 39.0
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 8.3e-46 188.3 328 40.9
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.9e-45 187.2 366 34.7
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.3e-43 181.0 205 52.2
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.1e-41 171.8 151 60.3
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.1e-40 171.4 175 53.1
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.6e-39 166.8 458 31.2
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.4e-39 166.4 229 46.7
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.4e-38 162.2 173 52.6
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 9.2e-37 158.3 314 39.8
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 6.0e-36 155.6 232 40.9
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 7.8e-28 128.6 168 41.7
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-22 110.9 88 64.8
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.5e-20 103.2 108 46.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 5.1e-19 99.4 205 32.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.5e-18 97.1 54 87.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.5e-18 97.1 85 58.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 9.0e-16 88.6 218 30.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.1e-13 81.6 168 33.9
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.5e-13 79.3 67 58.2
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-10 70.9 89 43.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.3e-10 70.1 58 56.9
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.6e-10 69.3 78 47.4
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.6e-10 68.6 91 47.3
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 8.2e-09 65.5 137 36.5


User provided reference genes

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