Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.6e-106 387.9 193 100.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.9e-84 315.5 172 89.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.7e-74 282.3 166 80.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.3e-72 275.0 170 78.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-70 270.4 168 78.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.1e-70 270.4 162 84.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.9e-70 267.7 169 78.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 9.1e-70 267.3 171 77.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.6e-69 265.8 165 77.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.6e-69 265.8 171 75.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.6e-69 265.8 169 76.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.6e-69 265.8 169 76.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.5e-69 265.0 179 72.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 5.9e-69 264.6 171 76.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.7e-69 264.2 170 73.5
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-68 263.8 171 75.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.2e-68 262.7 168 76.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.2e-68 262.7 168 76.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-68 262.3 167 75.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 5.0e-68 261.5 173 72.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.5e-68 261.2 173 71.1
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 6.5e-68 261.2 163 77.3
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-67 260.4 171 75.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-67 260.4 171 75.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-67 260.4 174 71.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.1e-67 260.4 173 72.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.9e-67 259.6 171 74.3
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.9e-67 259.6 183 68.9
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.2e-67 258.8 178 70.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.2e-67 258.8 162 77.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.2e-67 258.5 174 72.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.5e-67 258.1 173 71.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.2e-67 257.7 173 69.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.2e-66 256.9 170 72.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.6e-66 256.5 163 75.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.1e-66 256.1 173 71.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.1e-66 254.6 173 71.1
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 6.1e-66 254.6 173 71.1
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.1e-66 254.6 179 69.8
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.0e-65 253.8 173 69.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-65 253.8 171 70.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-65 253.8 166 75.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.4e-65 253.4 179 66.5
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.0e-65 252.3 172 72.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.0e-65 252.3 165 74.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 3.0e-65 252.3 183 67.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.9e-65 251.9 165 73.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.1e-65 251.5 171 69.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.7e-65 251.1 190 66.3
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 8.8e-65 250.8 172 71.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-64 250.4 158 78.5
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.5e-64 250.0 173 67.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.5e-64 250.0 160 75.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-64 250.0 171 69.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-64 250.0 173 68.2
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.5e-64 250.0 172 70.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.0e-64 249.6 160 75.6
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.0e-64 249.6 159 74.8
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.0e-64 249.6 159 74.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.0e-64 249.6 170 72.9
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-64 249.6 173 68.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.6e-64 249.2 173 68.8
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.3e-64 248.8 173 68.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.7e-64 248.1 166 71.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.7e-64 248.1 173 69.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.7e-64 248.1 170 68.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.4e-64 247.7 183 65.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 7.4e-64 247.7 189 64.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 9.7e-64 247.3 173 68.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.3e-63 246.9 160 75.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.7e-63 246.5 171 72.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.2e-63 246.1 165 72.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.8e-63 245.7 172 69.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.8e-63 245.7 168 72.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 4.8e-63 245.0 165 70.9
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 4.8e-63 245.0 163 74.2
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.3e-63 244.6 173 67.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.2e-63 244.2 175 66.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 8.2e-63 244.2 172 68.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 8.2e-63 244.2 171 69.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 68.2
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-62 243.8 163 71.2
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-62 243.8 173 68.2
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.1e-62 243.8 173 68.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.1e-62 243.8 173 67.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.1e-62 243.8 173 67.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-62 243.4 175 66.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-62 243.4 152 78.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.8e-62 243.0 173 67.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.4e-62 242.7 172 68.0
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.1e-62 242.3 171 67.8
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.1e-62 241.9 172 68.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.1e-62 241.9 175 65.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 5.3e-62 241.5 171 68.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 7.0e-62 241.1 172 67.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 7.0e-62 241.1 171 67.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 9.1e-62 240.7 172 67.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 9.1e-62 240.7 173 67.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.2e-61 240.4 159 69.8
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.2e-61 240.4 171 67.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.5e-61 240.0 172 66.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.5e-61 240.0 172 66.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.5e-61 240.0 172 66.9
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.0e-61 239.6 158 74.1
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.0e-61 239.6 166 68.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.5e-61 238.8 172 66.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.5e-61 238.8 172 66.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.5e-61 238.8 178 66.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.0e-60 237.3 170 67.6
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.7e-60 236.5 167 71.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.7e-60 236.5 167 71.9
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.7e-60 236.5 171 67.8
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.2e-60 236.1 170 66.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-60 235.7 167 71.3
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.0e-60 235.0 167 71.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-59 233.8 168 67.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 5.5e-59 231.5 171 67.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 7.2e-59 231.1 165 68.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.6e-58 228.8 171 66.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.1e-58 228.0 169 63.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 8.0e-58 227.6 171 63.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.4e-57 226.9 174 64.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.3e-57 226.1 173 64.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.9e-57 225.3 170 67.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.9e-57 225.3 164 65.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.5e-56 223.4 183 56.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.3e-56 222.2 166 63.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.7e-56 221.5 168 62.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.7e-55 219.9 181 64.6
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.7e-55 219.9 169 61.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.4e-54 216.1 169 60.9
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.4e-54 216.1 169 60.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 4.1e-54 215.3 162 64.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.3e-54 214.9 166 63.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.6e-53 213.4 133 75.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.6e-53 212.6 159 61.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.5e-53 212.2 160 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.0e-52 208.4 158 61.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.0e-52 208.4 169 58.0
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.5e-51 206.8 159 60.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.5e-51 204.9 160 57.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 7.2e-51 204.5 132 72.7
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.0e-49 199.1 161 60.9
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.0e-49 198.7 154 59.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.7e-48 194.1 152 57.9
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.3e-47 193.7 122 77.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 3.7e-47 192.2 157 56.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.3e-47 191.4 163 59.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.3e-47 191.0 130 69.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-46 189.9 138 70.3
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-45 186.8 172 54.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.7e-44 183.3 127 70.9
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-44 183.0 127 70.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.5e-43 179.5 156 52.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.1e-42 174.9 153 58.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-41 173.7 127 66.1
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 4.4e-40 168.7 165 53.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.5e-40 167.9 162 58.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.1e-38 162.2 176 51.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-37 160.6 166 52.4
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.6e-37 160.2 166 52.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.3e-36 156.4 166 50.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-35 154.1 104 72.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.2e-35 152.1 93 79.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.2e-35 151.4 116 68.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.0e-33 146.0 89 78.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 7.8e-29 131.3 91 67.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.5e-27 126.3 148 41.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.8e-26 122.9 93 60.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-24 117.5 73 72.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-22 110.9 175 40.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.2e-15 86.7 79 53.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-12 77.8 54 68.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.0e-12 77.8 121 41.3
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 4.3e-11 72.4 180 30.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-10 70.5 68 54.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-10 69.3 48 62.5
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.1e-09 67.8 172 30.8
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-08 62.4 35 77.1
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.7e-07 60.5 35 77.1
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 3.7e-07 59.3 58 43.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 4.9e-07 58.9 32 78.1
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 5.4e-06 55.5 32 75.0


User provided reference genes

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