Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 0.0e+00 1250.7 636 100.0
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 0.0e+00 1084.7 632 87.0
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.1e-285 985.3 636 80.2
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.4e-284 981.9 651 77.7
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.9e-282 974.9 635 79.7
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 8.4e-282 973.4 635 79.2
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.1e-244 850.1 620 69.7
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.0e-234 817.0 636 66.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.1e-233 813.5 642 66.7
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 4.7e-232 808.1 661 63.7
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.0e-231 807.0 644 65.1
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.0e-231 807.0 645 65.6
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 5.7e-230 801.2 644 64.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.3e-229 800.0 651 63.9
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 6.4e-229 797.7 654 63.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 8.3e-229 797.3 650 63.4
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.8e-228 796.2 641 64.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.6e-227 793.1 654 63.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 3.5e-227 792.0 617 67.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 5.9e-227 791.2 650 63.4
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 3.9e-226 788.5 639 64.5
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.5e-225 785.8 664 63.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 5.6e-225 784.6 650 62.8
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.3e-225 784.3 649 63.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.6e-224 783.1 661 62.5
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.4e-223 780.0 652 63.8
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.5e-219 765.4 649 63.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.3e-218 763.5 667 62.1
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.5e-217 757.3 641 61.3
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.6e-216 756.5 636 61.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.3e-215 752.7 649 61.2
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 6.8e-215 751.1 661 60.7
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 8.9e-215 750.7 646 60.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.5e-214 750.0 635 62.7
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.0e-214 749.6 634 61.2
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.8e-214 748.0 660 61.4
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 9.8e-214 747.3 648 63.6
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 2.2e-213 746.1 675 59.7
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.2e-213 746.1 636 61.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.9e-213 745.7 639 61.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.7e-213 745.3 647 62.1
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 6.4e-213 744.6 642 63.2
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.4e-212 743.4 638 62.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.4e-212 742.7 650 61.4
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 4.1e-212 741.9 637 62.5
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 7.1e-212 741.1 637 61.4
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.2e-211 740.3 654 59.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.6e-211 740.0 661 60.1
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.3e-210 736.9 640 60.6
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.7e-210 736.5 656 59.1
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.7e-210 736.5 656 59.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 5.1e-210 734.9 650 62.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 6.6e-210 734.6 629 61.4
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 6.6e-210 734.6 644 60.7
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 8.6e-210 734.2 638 59.7
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.5e-209 733.4 662 59.5
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 4.3e-209 731.9 638 61.3
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 5.6e-209 731.5 632 61.2
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.2e-208 730.3 638 59.9
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.1e-208 729.6 642 62.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 6.2e-208 728.0 635 61.3
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.4e-207 726.9 635 60.5
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.4e-207 726.9 642 60.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.8e-207 726.5 646 60.1
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.0e-206 723.0 649 58.9
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 7.6e-206 721.1 637 59.5
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 7.6e-206 721.1 647 58.6
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 9.9e-206 720.7 653 59.7
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.9e-204 716.5 634 60.3
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 1.9e-204 716.5 635 60.9
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 2.7e-203 712.6 656 59.3
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.5e-201 706.8 640 59.7
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 5.2e-199 698.4 638 57.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.8e-199 698.0 686 57.7
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 9.9e-198 694.1 636 57.5
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 2.9e-197 692.6 644 57.9
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.9e-197 691.8 598 60.4
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.4e-196 689.5 637 58.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 5.3e-191 671.8 641 55.2
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.4e-188 661.8 581 61.1
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-184 650.2 567 62.3
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 4.9e-181 638.6 527 62.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-180 637.1 649 54.5
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 4.2e-180 635.6 482 66.0
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.0e-174 616.7 658 51.5
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.5e-174 615.5 638 53.8
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.9e-173 612.8 521 59.7
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 4.6e-171 605.5 674 52.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.6e-166 589.7 659 51.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.9e-164 583.6 650 50.5
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.3e-162 576.6 492 61.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 6.7e-162 575.1 499 61.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.9e-161 573.5 531 61.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.6e-155 552.4 589 53.1
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.8e-151 540.4 707 44.6
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.7e-147 526.6 485 60.2
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.0e-146 523.1 553 53.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.7e-133 480.7 626 45.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.5e-124 450.3 436 58.0
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.2e-120 437.2 509 50.5
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 3.0e-114 416.8 744 37.2
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.7e-109 401.0 682 38.9
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 7.3e-108 395.6 387 58.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.5e-100 371.3 291 68.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.8e-98 364.4 336 61.0
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.1e-98 363.6 566 40.8
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.0e-97 360.9 276 64.1
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 4.0e-90 336.7 289 63.3
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 5.8e-89 332.8 626 34.8
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 9.0e-82 308.9 323 52.6
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 3.5e-78 297.0 290 57.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.7e-77 292.4 434 48.2
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 9.6e-76 288.9 494 38.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.8e-67 260.0 328 47.6
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 7.9e-62 242.7 176 69.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.2e-59 233.0 206 62.6
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 3.8e-56 223.8 380 42.6
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.5e-54 217.2 377 40.6
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.1e-50 205.7 156 65.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.4e-49 200.7 189 55.6
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 7.2e-47 193.0 149 65.1
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.1e-34 152.5 175 53.1
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.2e-33 149.1 116 58.6
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.0e-33 148.3 322 31.4
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.6e-33 147.9 722 26.5
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 9.1e-18 96.3 126 43.7
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.3e-16 92.4 158 37.3
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.7e-16 92.0 67 73.1
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.9e-16 91.3 110 50.9
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 6.5e-16 90.1 87 54.0
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.0e-13 82.8 110 46.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.0e-13 82.8 98 46.9
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-13 82.4 55 67.3
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 7.5e-12 76.6 55 63.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 4.5e-09 67.4 63 54.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-07 62.0 63 50.8


User provided reference genes

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