Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 8.8e-25 116.3 66 100.0
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 2.8e-23 111.3 66 97.0
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 2.9e-20 101.3 71 87.3
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 3.8e-20 100.9 69 87.0
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 8.6e-20 99.8 66 87.9
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 1.9e-19 98.6 66 92.4
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 3.3e-19 97.8 67 73.1
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 4.2e-19 97.4 69 85.5
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 5.5e-19 97.1 67 86.6
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 9.5e-19 96.3 66 87.9
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 9.5e-19 96.3 64 92.2
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 9.5e-19 96.3 70 85.7
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.8e-18 94.7 65 86.2
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.0e-17 92.8 66 89.4
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 4.0e-17 90.9 68 86.8
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 3.4e-16 87.8 66 83.3
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 3.4e-16 87.8 66 83.3
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 3.4e-16 87.8 66 81.8
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 4.4e-16 87.4 66 81.8
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 4.4e-16 87.4 66 81.8
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 7.5e-16 86.7 66 81.8
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.3e-15 85.9 66 81.8
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 6.3e-15 83.6 64 82.8
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 2.4e-14 81.6 78 73.1
Lj2g0008804 Lotus japonicus HOM05D007867 ORTHO05D009953 7.0e-14 80.1 70 77.1
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 9.2e-14 79.7 42 88.1
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.7e-13 78.2 68 77.9
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 1.0e-12 76.3 38 92.1
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 1.0e-12 76.3 74 73.0
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.3e-12 75.9 67 67.2
FAN28G0366 Fragaria x ananassa HOM05D007867 ORTHO05D009953 1.3e-12 75.9 46 84.8
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 3.9e-12 74.3 73 68.5
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 3.9e-12 74.3 66 75.8
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 6.6e-12 73.6 77 54.5
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 8.6e-12 73.2 66 75.8
Haze_03934 Corylus avellana HOM05D007867 ORTHO05D009953 1.1e-11 72.8 66 74.2
Gorai.007G230100 Gossypium raimondii HOM05D007867 ORTHO05D009953 1.1e-11 72.8 66 74.2
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 1.9e-11 72.0 68 70.6
TPR.G37059 Trifolium pratense HOM05D007867 ORTHO05D009953 2.5e-11 71.6 67 59.7
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 5.6e-11 70.5 47 76.6
Cpa.g.c33237.1 Carica papaya HOM05D007867 ORTHO05D009953 1.6e-10 68.9 66 69.7
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 2.1e-10 68.6 48 77.1
Oeu014206.1 Olea europaea HOM05D007867 ORTHO05D009953 2.8e-10 68.2 47 68.1
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 6.1e-10 67.0 66 71.2
Gohir.A02G146200 Gossypium hirsutum HOM05D007867 ORTHO05D009953 6.1e-10 67.0 66 69.7
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 6.1e-10 67.0 65 70.8
Gohir.A05G401300 Gossypium hirsutum HOM05D007867 ORTHO05D009953 8.0e-10 66.6 75 53.3
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 1.0e-09 66.2 67 70.1
Zm00001eb302470 Zea mays HOM05D007867 ORTHO05D009953 1.0e-09 66.2 79 67.1
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 1.4e-09 65.9 64 59.4
Eucgr.I02581 Eucalyptus grandis HOM05D007867 ORTHO05D009953 3.1e-09 64.7 50 66.0
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 5.2e-09 63.9 40 80.0
MBI16_g26237_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 6.8e-09 63.5 66 68.2
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 6.8e-09 63.5 29 96.6
Solyc01g106300.3 Solanum lycopersicum HOM05D007867 ORTHO05D009953 2.6e-08 61.6 55 63.6
CiPaw.06G161100 Carya illinoinensis HOM05D007867 ORTHO05D009953 7.5e-08 60.1 48 64.6
FAN23G2231 Fragaria x ananassa HOM05D007867 ORTHO05D009953 7.5e-08 60.1 78 48.7
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 1.3e-07 59.3 66 63.6
SHI12190 Sapria himalayana HOM05D007867 ORTHO05D009953 1.7e-07 58.9 44 65.9
Mapoly0137s0033 Marchantia polymorpha HOM05D007867 ORTHO05D009953 2.9e-07 58.2 87 54.0
Prupe.8G075700 Prunus persica HOM05D007867 ORTHO05D009953 6.4e-07 57.0 68 64.7
Nitab4.5_0000036g0410 Nicotiana tabacum HOM05D007867 ORTHO05D009953 2.4e-06 55.1 62 66.1
Nitab4.5_0009046g0010 Nicotiana tabacum HOM05D007867 ORTHO05D009953 2.4e-06 55.1 62 66.1
Prupe.6G209900 Prunus persica HOM05D007867 ORTHO05D009953 2.4e-06 55.1 66 60.6
ClCG09G016440 Citrullus lanatus HOM05D007867 ORTHO05D009953 4.1e-06 54.3 46 65.2
CSS0034185 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 5.4e-06 53.9 24 95.8
Lalb_Chr16g0381471 Lupinus albus HOM05D007867 ORTHO05D009953 5.4e-06 53.9 64 62.5
Manes.07G046800 Manihot esculenta HOM05D042710 ORTHO05D009953 7.0e-06 53.5 71 57.7
Hma1.2p1_0908F.1_g235690 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 9.2e-06 53.1 61 63.9


User provided reference genes

Program Settings