Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.4e-216 755.0 457 100.0
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.1e-163 580.5 481 77.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-146 523.5 462 76.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.9e-136 488.4 538 63.2
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.5e-134 481.9 540 62.6
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.9e-127 459.5 512 62.7
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.5e-123 447.2 485 62.9
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.0e-100 369.4 481 56.8
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.8e-92 344.0 473 53.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.4e-89 333.6 477 53.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 7.8e-88 328.6 421 55.1
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 7.3e-86 322.0 464 53.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-82 311.2 488 48.6
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.7e-82 310.8 472 50.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.7e-82 310.8 472 50.0
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.9e-81 307.4 424 52.8
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.7e-80 303.5 477 50.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.3e-79 300.4 480 48.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.4e-76 291.2 424 49.1
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.4e-76 291.2 468 49.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.8e-76 290.8 490 46.9
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.0e-76 288.5 426 47.2
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.5e-75 287.7 467 47.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.0e-75 287.3 393 49.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.5e-72 276.6 423 50.6
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.7e-71 272.3 508 45.9
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-70 271.2 363 50.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.7e-69 266.5 475 45.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.4e-68 264.6 478 46.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.1e-68 263.5 432 46.5
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.0e-66 258.5 424 46.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.5e-65 253.8 444 44.8
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.0e-63 248.4 432 45.1
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.1e-62 245.0 444 48.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.9e-62 244.2 399 47.9
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.7e-62 242.7 470 44.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.4e-62 242.3 369 50.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.4e-62 242.3 529 42.2
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.3e-61 239.2 530 38.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-60 237.7 407 45.5
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.0e-60 235.3 503 40.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-59 234.6 428 46.3
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.6e-59 232.3 533 37.9
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-58 230.7 409 46.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.5e-58 229.2 354 48.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.5e-57 227.3 474 43.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 9.4e-57 225.3 436 43.1
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 6.1e-56 222.6 533 41.5
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 7.9e-56 222.2 472 43.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 7.9e-56 222.2 472 43.2
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.8e-55 221.1 490 46.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.3e-55 220.7 540 41.1
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.3e-55 220.7 482 41.7
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.8e-55 218.8 462 41.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.5e-54 218.0 601 32.4
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.9e-54 217.6 387 44.2
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.5e-54 217.2 592 34.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 4.3e-54 216.5 531 38.4
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.7e-54 216.1 479 39.9
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 7.4e-54 215.7 450 41.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 9.7e-54 215.3 436 43.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 9.7e-54 215.3 464 41.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.8e-53 213.8 350 47.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.3e-53 212.6 511 40.3
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.8e-52 211.1 459 42.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.8e-52 211.1 447 39.8
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-52 210.3 439 42.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 6.9e-52 209.1 464 39.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 9.1e-52 208.8 419 42.5
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.5e-51 208.0 378 44.2
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.5e-51 206.5 464 38.4
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 5.9e-51 206.1 385 39.5
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 5.9e-51 206.1 385 39.5
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 8.5e-50 202.2 470 40.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.9e-49 201.1 388 41.2
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-48 197.6 388 40.7
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.7e-48 197.2 495 37.4
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 4.7e-48 196.4 511 38.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.0e-47 195.3 552 37.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.8e-47 194.5 493 38.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 5.1e-47 193.0 457 39.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.6e-46 190.7 519 36.8
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.3e-46 190.3 487 37.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 7.4e-46 189.1 512 37.7
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.8e-45 187.2 548 34.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.7e-45 186.8 408 42.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.4e-44 184.1 461 39.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.3e-44 183.0 481 35.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.6e-43 180.6 467 37.5
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.5e-43 179.9 451 35.0
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.2e-42 177.6 427 39.6
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.9e-42 177.2 541 37.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.1e-41 175.3 548 36.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-41 175.3 514 36.4
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-41 174.9 471 36.7
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.2e-41 173.7 399 39.1
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.5e-41 172.9 529 35.7
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.5e-41 172.9 495 33.9
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 9.4e-41 172.2 451 37.9
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.6e-40 171.4 413 39.5
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.7e-40 170.6 421 38.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.3e-39 167.5 566 35.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 3.0e-39 167.2 542 36.7
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 3.0e-39 167.2 433 39.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.9e-39 166.8 516 34.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.9e-39 166.8 359 40.4
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.0e-38 164.5 564 34.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.0e-38 164.5 487 33.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 3.3e-38 163.7 468 38.5
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.3e-38 163.7 468 39.1
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 9.7e-38 162.2 568 33.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 9.7e-38 162.2 497 34.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.3e-37 159.5 466 40.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.4e-36 158.3 575 33.4
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.0e-36 156.0 579 32.1
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.3e-34 151.8 561 32.8
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-34 151.8 410 36.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.4e-33 145.6 567 30.9
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.2e-32 145.2 367 37.3
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.7e-32 144.1 440 36.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.8e-31 141.4 567 30.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.3e-31 141.0 599 32.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 6.7e-31 139.4 191 47.1
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.2e-30 138.7 383 33.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-30 138.7 475 31.2
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.0e-30 137.9 523 31.7
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 2.0e-30 137.9 412 36.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-30 137.9 469 32.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.4e-30 136.7 467 36.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 7.5e-30 136.0 520 32.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.1e-28 130.2 519 29.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.5e-27 126.7 371 35.6
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-26 124.4 388 33.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.8e-26 123.6 224 44.2
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 6.5e-26 122.9 417 36.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 3.2e-25 120.6 413 34.1
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 6.1e-24 116.3 401 32.9
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 3.0e-23 114.0 393 32.3
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.8e-23 112.8 470 29.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.8e-23 112.5 545 29.0
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.5e-22 111.7 417 30.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.0e-22 111.3 430 32.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.7e-21 107.1 427 32.8
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.8e-21 106.7 411 32.6
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.8e-21 106.7 421 31.8
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.4e-20 104.4 367 34.6
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 4.1e-20 103.6 390 32.1
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.7e-19 100.9 139 48.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-18 98.6 191 46.1
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.7e-18 98.2 535 29.2
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.3e-17 94.0 353 31.4
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 7.2e-17 92.8 291 35.4
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.7e-16 90.1 188 42.0
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.0e-16 89.4 445 29.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 3.0e-15 87.4 137 51.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 4.0e-15 87.0 183 40.4
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 6.8e-15 86.3 362 30.9
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 6.3e-13 79.7 511 34.1
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-12 78.2 394 29.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-12 77.4 382 30.4
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-11 75.5 208 34.6
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.7e-11 74.3 382 26.7
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.5e-11 73.6 76 59.2
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 5.9e-11 73.2 403 30.3
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 7.8e-11 72.8 466 31.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-10 71.2 409 29.8
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.8e-10 70.5 500 25.4
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 6.6e-10 69.7 411 26.5
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.5e-09 68.6 386 27.2
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.7e-08 63.5 331 27.2
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.4e-07 62.0 437 24.9
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.9e-07 59.3 86 50.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.9e-07 59.3 86 50.0
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 2.0e-06 58.2 146 39.7
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.4e-06 57.0 121 38.0


User provided reference genes

Program Settings