Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 5.9e-58 227.3 109 100.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.8e-41 171.4 89 89.9
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.1e-40 169.9 89 89.9
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.9e-40 169.1 89 88.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-38 162.9 89 87.6
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.8e-38 162.5 89 85.4
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.0e-38 161.4 89 83.1
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.2e-38 161.0 98 76.5
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 8.8e-38 160.2 89 84.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.0e-37 159.1 89 84.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 2.6e-37 158.7 89 85.4
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 9.7e-37 156.8 89 82.0
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.7e-36 156.0 90 83.3
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-36 156.0 88 83.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.8e-36 154.5 87 83.9
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.8e-36 154.5 87 83.9
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-35 153.3 89 77.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.8e-35 152.5 89 78.7
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.4e-35 152.1 89 77.5
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.2e-34 149.8 89 77.5
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.6e-34 149.4 89 79.8
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.6e-34 149.4 89 78.7
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-34 149.4 89 78.7
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.0e-34 149.1 89 79.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-34 148.7 89 78.7
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.5e-34 148.3 89 77.5
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.9e-34 147.5 89 77.5
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.9e-34 147.5 89 77.5
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.3e-33 146.4 89 78.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.7e-33 146.0 89 82.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.7e-33 146.0 89 77.5
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.2e-33 145.6 89 78.7
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.8e-33 144.8 89 75.3
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.8e-33 144.8 92 76.1
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 3.8e-33 144.8 88 80.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.0e-33 144.4 89 74.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 6.5e-33 144.1 89 74.2
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.5e-32 142.9 89 76.4
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.2e-32 141.7 90 77.8
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.2e-32 141.7 91 75.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.2e-32 141.4 92 76.1
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 4.2e-32 141.4 92 75.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 4.2e-32 141.4 89 71.9
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.1e-31 139.0 92 73.9
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 2.1e-31 139.0 92 76.1
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.1e-31 139.0 91 74.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.7e-31 138.7 91 73.6
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.7e-31 138.7 94 67.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.7e-31 137.9 91 73.6
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.1e-31 137.5 89 70.8
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.1e-31 137.5 89 70.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.0e-30 136.7 89 69.7
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.0e-30 136.7 92 73.9
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.4e-30 136.3 89 73.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-30 136.3 89 77.5
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.8e-30 136.0 89 69.7
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.3e-30 135.6 89 69.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.0e-30 135.2 89 71.9
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 3.0e-30 135.2 89 71.9
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.0e-30 134.8 89 75.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 4.0e-30 134.8 89 71.9
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.2e-30 134.4 92 72.8
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 6.8e-30 134.0 89 68.5
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.2e-29 133.3 89 68.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.2e-29 133.3 89 73.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.2e-29 133.3 89 73.0
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.5e-29 132.9 89 75.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.6e-29 132.1 87 74.7
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.6e-29 132.1 89 74.2
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.6e-29 132.1 89 67.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.4e-29 131.7 89 73.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 4.4e-29 131.3 90 67.8
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 4.4e-29 131.3 89 69.7
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 9.8e-29 130.2 89 67.4
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.3e-28 129.8 89 73.0
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.3e-28 129.8 89 68.5
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.8e-28 128.6 87 73.6
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 3.7e-28 128.3 92 70.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.8e-28 127.9 87 65.5
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 8.3e-28 127.1 89 68.5
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.1e-27 126.7 90 68.9
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.1e-27 125.2 92 68.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 4.1e-27 124.8 93 69.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 9.1e-27 123.6 88 67.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.2e-26 123.2 92 65.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-26 123.2 91 67.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.2e-26 123.2 90 67.8
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.6e-26 122.9 89 67.4
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.6e-26 122.9 89 67.4
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.6e-26 122.9 88 67.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.5e-26 121.7 89 70.8
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.5e-26 121.7 89 70.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 3.5e-26 121.7 89 64.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 7.7e-26 120.6 92 67.4
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-25 120.2 90 67.8
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.3e-25 119.8 92 65.2
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.3e-25 119.8 92 65.2
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.9e-25 118.6 89 66.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.8e-25 118.2 89 60.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 5.0e-25 117.9 92 65.2
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 8.6e-25 117.1 89 65.2
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.1e-24 116.7 117 52.1
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.5e-24 116.3 89 59.6
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.5e-24 116.3 92 69.6
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.9e-24 115.9 92 63.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.9e-24 115.9 92 63.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.5e-24 114.4 91 62.6
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 7.2e-24 114.0 90 62.2
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 7.2e-24 114.0 90 64.4
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.2e-23 113.2 90 64.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.1e-23 112.5 89 61.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 6.1e-23 110.9 89 64.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 6.1e-23 110.9 93 65.6
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 8.0e-23 110.5 74 74.3
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.0e-22 110.2 89 61.8
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.4e-22 109.8 90 65.6
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.8e-22 109.4 89 61.8
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.0e-22 108.6 93 62.4
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.2e-21 106.7 91 62.6
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.2e-21 106.7 90 62.2
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.2e-21 106.7 91 59.3
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.6e-21 105.5 63 73.0
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.4e-21 104.8 73 69.9
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.2e-20 102.4 91 59.3
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 2.2e-20 102.4 91 59.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.8e-20 102.1 89 59.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.7e-20 101.7 95 58.9
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 5.4e-19 97.8 53 79.2
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.0e-18 95.9 79 59.5
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.7e-17 92.8 90 56.7
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.7e-17 92.8 77 63.6
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.5e-16 89.0 74 67.6
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 3.3e-16 88.6 70 57.1
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 7.3e-16 87.4 74 60.8
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.3e-16 87.4 76 61.8
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 9.5e-16 87.0 75 61.3
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.0e-14 83.6 77 58.4
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.4e-13 78.2 92 46.7
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-12 76.6 73 53.4
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.9e-11 72.8 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 9.2e-11 70.5 76 50.0
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.6e-10 69.7 53 60.4
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.7e-10 68.9 75 49.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-09 66.6 91 46.2
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-08 63.5 52 65.4
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-08 63.5 52 65.4
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.9e-08 62.8 40 70.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 2.5e-08 62.4 87 35.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-07 58.9 59 47.5
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.8e-06 56.2 89 37.1
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 3.1e-06 55.5 42 59.5


User provided reference genes

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