Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 6.4e-93 344.0 161 100.0
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 4.4e-62 241.5 170 74.7
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.3e-48 196.8 171 62.6
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.9e-47 191.0 165 61.2
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.9e-47 191.0 165 61.2
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-44 181.0 165 58.8
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.0e-42 177.2 166 56.6
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-40 169.5 162 61.1
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 8.4e-37 157.5 172 54.1
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.5e-36 156.0 154 57.1
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 2.5e-36 156.0 165 50.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.2e-36 155.6 166 51.2
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 3.2e-36 155.6 162 51.2
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.5e-35 152.1 142 56.3
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.0e-34 150.6 165 57.6
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-34 149.1 159 58.5
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.1e-33 147.1 144 54.2
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 7.4e-33 144.4 165 50.3
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.7e-33 144.1 159 55.3
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.8e-32 142.5 155 53.5
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.8e-32 141.7 163 50.3
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 5.3e-31 138.3 153 49.7
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 3.4e-30 135.6 170 48.8
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.9e-28 129.8 155 51.0
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 7.2e-28 127.9 147 48.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 9.3e-28 127.5 148 43.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.6e-27 125.6 163 47.2
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 4.6e-27 125.2 156 42.3
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.1e-27 124.8 158 48.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.9e-27 124.4 162 46.9
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.0e-26 124.0 137 49.6
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.3e-26 123.6 149 49.0
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.8e-26 123.2 157 46.5
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.1e-26 121.7 164 44.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.9e-25 119.8 162 43.8
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.3e-25 119.0 150 48.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 4.3e-25 118.6 156 46.8
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 7.4e-25 117.9 123 51.2
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 7.4e-25 117.9 167 44.9
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 7.4e-25 117.9 163 44.8
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 2.8e-24 115.9 181 43.1
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.4e-23 113.6 171 42.1
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 2.4e-23 112.8 159 44.0
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 6.9e-23 111.3 146 46.6
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 9.1e-23 110.9 183 42.1
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 9.1e-23 110.9 166 44.6
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.2e-22 110.5 151 49.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.2e-22 110.5 166 41.6
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-22 110.2 182 42.3
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.5e-22 110.2 146 45.2
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.0e-22 109.8 183 41.5
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 2.0e-22 109.8 154 43.5
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 5.9e-22 108.2 156 43.6
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.7e-22 107.8 182 41.2
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.7e-21 106.7 182 42.3
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.2e-21 106.3 168 41.1
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.2e-21 106.3 151 45.7
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.9e-21 105.9 151 45.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.8e-21 105.5 145 47.6
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.4e-20 103.6 162 38.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.4e-20 103.6 160 45.6
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-20 103.6 147 43.5
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-20 103.6 147 44.2
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.9e-20 103.2 165 40.0
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-20 102.8 164 38.4
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 4.2e-20 102.1 156 38.5
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.2e-20 101.3 148 43.9
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-19 100.5 148 45.3
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.6e-19 100.1 145 45.5
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.1e-19 99.8 166 39.2
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.1e-19 99.8 166 38.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-19 99.4 146 39.7
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.1e-18 95.1 146 39.7
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.1e-17 94.0 150 37.3
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.5e-17 93.6 150 40.0
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.6e-17 92.8 117 45.3
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 5.7e-17 91.7 157 42.7
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.7e-17 91.7 153 38.6
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 5.7e-17 91.7 151 40.4
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 3.7e-16 89.0 142 40.1
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.8e-16 88.6 146 42.5
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 4.8e-16 88.6 157 40.8
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.8e-16 88.6 152 36.8
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 4.8e-16 88.6 145 37.2
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.4e-15 87.0 146 40.4
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 5.3e-15 85.1 158 39.2
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 5.3e-15 85.1 161 34.8
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 6.9e-15 84.7 143 39.2
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 9.1e-15 84.3 145 38.6
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 2.0e-14 83.2 156 35.3
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 2.0e-14 83.2 155 38.7
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 2.0e-14 83.2 152 40.1
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-14 82.8 139 38.1
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 2.6e-14 82.8 144 38.9
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.4e-14 82.4 155 36.1
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 3.4e-14 82.4 139 41.0
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 4.5e-14 82.0 93 49.5
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-13 80.5 134 41.0
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 1.7e-13 80.1 156 33.3
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 5.0e-13 78.6 106 49.1
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 6.5e-13 78.2 164 36.0
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 8.5e-13 77.8 148 38.5
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 8.5e-13 77.8 173 36.4
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-12 76.6 141 36.9
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 4.2e-12 75.5 154 40.3
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.2e-12 75.5 93 41.9
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 5.5e-12 75.1 146 38.4
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 5.5e-12 75.1 153 35.3
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 5.5e-12 75.1 108 44.4
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 5.5e-12 75.1 160 35.6
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 7.2e-12 74.7 91 49.5
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 7.2e-12 74.7 140 37.1
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-11 73.9 138 37.0
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.2e-11 73.9 99 41.4
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.6e-11 73.6 149 39.6
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-11 73.6 143 36.4
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.1e-11 73.2 117 45.3
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 2.1e-11 73.2 103 43.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.1e-11 73.2 136 30.9
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.6e-11 72.4 172 30.2
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.7e-11 72.0 137 38.0
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 1.4e-10 70.5 147 36.7
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.8e-10 70.1 174 32.8
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.0e-10 69.3 151 31.8
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 5.2e-10 68.6 169 30.8
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 5.2e-10 68.6 156 32.7
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.2e-10 68.6 175 32.0
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.2e-10 68.6 137 37.2
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 6.7e-10 68.2 182 31.9
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.1e-09 67.4 146 32.9
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.1e-09 67.4 184 31.5
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 2.6e-09 66.2 139 37.4
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.6e-09 66.2 160 31.9
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 2.6e-09 66.2 142 31.7
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 3.3e-09 65.9 163 35.0
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 3.3e-09 65.9 153 34.0
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 4.4e-09 65.5 138 36.2
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.7e-09 64.3 132 34.1
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 2.2e-08 63.2 145 34.5
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 2.8e-08 62.8 155 34.2
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 4.8e-08 62.0 98 39.8
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.8e-08 62.0 144 34.7
FAN15G3562 Fragaria x ananassa HOM05D025097 ORTHO05D025563 6.3e-08 61.6 164 31.1
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 8.2e-08 61.2 137 32.8
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 8.2e-08 61.2 143 32.9
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-07 60.5 86 45.3
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.8e-07 60.1 153 30.1
Gohir.A05G212200 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.4e-07 59.7 150 31.3
Glyma.14G089087 Glycine max HOM05D014755 ORTHO05D005146 3.1e-07 59.3 137 35.0
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 5.3e-07 58.5 148 37.2
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.2e-06 57.4 92 39.1
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 1.2e-06 57.4 137 33.6
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 1.2e-06 57.4 134 37.3
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.6e-06 56.2 163 28.8
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 3.5e-06 55.8 94 37.2
Glyma.17G232800 Glycine max HOM05D014755 ORTHO05D005146 3.5e-06 55.8 137 32.8
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 4.5e-06 55.5 127 32.3
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 7.7e-06 54.7 133 36.8


User provided reference genes

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