Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 3.1e-23 110.9 55 100.0
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 6.5e-21 103.2 52 94.2
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.9e-20 101.7 52 94.2
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.5e-20 101.3 52 92.3
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 2.5e-20 101.3 52 92.3
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 3.5e-19 97.4 55 87.3
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 1.8e-18 95.1 52 86.5
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.1e-18 93.6 52 84.6
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.1e-18 93.6 52 84.6
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.5e-17 92.0 52 84.6
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 1.9e-17 91.7 54 79.6
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 2.5e-17 91.3 48 91.7
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 5.7e-17 90.1 52 78.8
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 7.4e-17 89.7 52 78.8
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 9.6e-17 89.4 52 78.8
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 9.6e-17 89.4 55 80.0
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 1.3e-16 89.0 55 72.7
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 2.1e-16 88.2 51 86.3
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 2.1e-16 88.2 48 83.3
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 2.1e-16 88.2 58 77.6
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 2.8e-16 87.8 48 83.3
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 2.8e-16 87.8 48 83.3
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 2.8e-16 87.8 48 83.3
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 3.7e-16 87.4 50 78.0
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 4.8e-16 87.0 46 91.3
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 4.8e-16 87.0 51 80.4
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 6.2e-16 86.7 52 76.9
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 8.2e-16 86.3 52 78.8
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.1e-15 85.9 55 80.0
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 1.8e-15 85.1 48 81.2
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 1.8e-15 85.1 48 81.2
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 1.8e-15 85.1 48 81.2
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 1.8e-15 85.1 48 81.2
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.8e-15 85.1 49 81.6
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 3.1e-15 84.3 55 78.2
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 4.0e-15 84.0 50 86.0
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 1.5e-14 82.0 55 72.7
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 2.0e-14 81.6 51 72.5
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 3.4e-14 80.9 50 74.0
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 5.8e-14 80.1 50 74.0
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 7.6e-14 79.7 46 80.4
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 2.2e-13 78.2 58 70.7
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.2e-13 78.2 47 78.7
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.9e-12 75.1 38 92.1
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 2.5e-12 74.7 50 72.0
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 7.1e-12 73.2 37 91.9
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 7.1e-12 73.2 37 91.9
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 1.6e-11 72.0 37 89.2
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 3.5e-11 70.9 34 94.1
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 3.5e-11 70.9 34 94.1
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 7.9e-11 69.7 37 83.8
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 1.3e-10 68.9 52 63.5
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 2.3e-10 68.2 36 83.3
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 3.0e-10 67.8 57 59.6
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 1.5e-09 65.5 34 85.3
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 3.3e-09 64.3 98 40.8
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 5.7e-09 63.5 34 85.3
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 9.7e-09 62.8 34 79.4
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 9.7e-09 62.8 34 79.4
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 8.2e-08 59.7 31 83.9
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 2.4e-07 58.2 30 86.7
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 5.3e-07 57.0 45 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1884 Anthoceros agrestis HOM05D063975 ORTHO05D010361 1.0e-05 52.8 53 50.9


User provided reference genes

Program Settings