Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 5.0e-86 321.2 183 100.0
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 3.3e-53 212.2 184 73.9
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 3.1e-51 205.7 184 71.7
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 1.5e-50 203.4 197 69.5
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 4.1e-48 195.3 185 67.0
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 3.5e-47 192.2 184 70.7
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 4.2e-24 115.5 181 47.5
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 9.3e-24 114.4 165 50.3
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 1.9e-21 106.7 181 42.5
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 3.3e-21 105.9 182 47.8
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 5.6e-21 105.1 191 42.4
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.3e-20 104.0 177 43.5
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 1.3e-20 104.0 165 45.5
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 2.1e-20 103.2 182 46.7
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 1.5e-18 97.1 173 41.0
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 1.5e-18 97.1 174 45.4
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 5.8e-18 95.1 189 47.6
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 1.3e-17 94.0 185 39.5
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 1.1e-16 90.9 164 41.5
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 7.1e-16 88.2 167 43.7
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 4.6e-15 85.5 206 44.2
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 7.9e-15 84.7 173 46.2
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 1.3e-14 84.0 174 46.6
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 1.8e-14 83.6 164 38.4
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.3e-14 83.2 137 46.0
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 8.7e-14 81.3 174 40.2
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 1.1e-13 80.9 185 36.8
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 1.1e-13 80.9 185 36.8
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 1.1e-13 80.9 167 41.9
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 1.5e-13 80.5 111 46.8
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 2.5e-13 79.7 140 45.7
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 3.3e-13 79.3 176 40.3
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 4.3e-13 79.0 177 44.1
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 9.7e-13 77.8 160 45.6
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 1.6e-12 77.0 177 35.6
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 2.2e-12 76.6 107 47.7
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 6.3e-12 75.1 147 45.6
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 8.2e-12 74.7 184 39.1
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 2.4e-11 73.2 165 35.2
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 5.3e-11 72.0 186 33.3
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 5.3e-11 72.0 180 33.3
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 5.3e-11 72.0 130 43.1
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 6.9e-11 71.6 168 46.4
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 6.9e-11 71.6 163 32.5
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 6.9e-11 71.6 158 44.3
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 9.0e-11 71.2 164 36.6
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 1.2e-10 70.9 132 41.7
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 1.5e-10 70.5 167 36.5
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 1.5e-10 70.5 166 38.0
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 1.7e-09 67.0 180 36.7
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 3.8e-09 65.9 130 36.9
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 5.0e-09 65.5 108 38.9
FAN23G3114 Fragaria x ananassa HOM05D007502 ORTHO05D010230 6.5e-09 65.1 109 50.5
Haze_15266 Corylus avellana HOM05D064528 ORTHO05D043735 8.5e-09 64.7 108 45.4
Nitab4.5_0003129g0050 Nicotiana tabacum HOM05D007502 ORTHO05D010230 8.5e-09 64.7 74 59.5
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 8.5e-09 64.7 171 33.9
Actinidia36426 Actinidia chinensis HOM05D001896 ORTHO05D001862 4.2e-08 62.4 88 45.5
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 4.2e-08 62.4 120 33.3
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 5.5e-08 62.0 179 33.5
CDE06G1988 Ceratophyllum demersum HOM05D007502 ORTHO05D010230 6.1e-07 58.5 130 35.4
TPR.G9337 Trifolium pratense HOM05D007502 ORTHO05D010230 6.1e-07 58.5 116 35.3
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 1.0e-06 57.8 108 34.3
SalBow5G4540 Salvia bowleyana HOM05D007502 ORTHO05D010230 2.3e-06 56.6 178 41.0
SEGI_05256 Sequoiadendron giganteum HOM05D007502 ORTHO05D010230 2.3e-06 56.6 141 37.6
Cfa004146 Carpinus fangiana HOM05D064528 ORTHO05D043735 3.9e-06 55.8 106 43.4


User provided reference genes

Program Settings