Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 9.4e-165 583.6 316 100.0
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.9e-80 303.5 242 74.0
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 4.2e-80 302.4 237 74.3
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 1.3e-73 280.8 244 69.3
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 4.3e-69 265.8 244 65.6
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.3e-60 237.7 237 59.9
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 8.2e-60 235.0 239 60.7
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.2e-58 231.1 237 59.5
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 8.4e-57 224.9 223 57.4
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.1e-56 224.6 299 47.2
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.2e-55 221.1 237 56.5
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 2.7e-55 219.9 230 57.8
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 3.9e-54 216.1 249 54.2
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 3.9e-54 216.1 407 39.6
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 3.3e-53 213.0 229 57.6
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 7.4e-53 211.8 229 55.5
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 2.2e-52 210.3 230 55.7
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 1.8e-51 207.2 372 40.6
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 3.1e-51 206.5 240 55.4
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 5.3e-51 205.7 219 53.9
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 5.3e-51 205.7 228 55.7
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 1.5e-50 204.1 230 55.7
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 2.0e-50 203.8 243 51.9
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 1.3e-49 201.1 228 52.6
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 1.7e-49 200.7 231 52.4
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 1.7e-49 200.7 239 51.5
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 5.0e-49 199.1 227 52.0
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 6.5e-49 198.7 230 55.2
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 6.5e-49 198.7 227 52.4
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 8.5e-49 198.4 227 53.3
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 8.5e-49 198.4 230 52.2
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.9e-48 197.2 227 52.0
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.9e-48 197.2 227 52.0
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 3.2e-48 196.4 230 52.6
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 3.2e-48 196.4 227 53.7
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 3.2e-48 196.4 227 51.1
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 4.2e-48 196.1 245 51.0
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 9.4e-48 194.9 238 51.3
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 2.7e-47 193.4 226 50.9
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 6.1e-47 192.2 234 51.3
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 7.9e-47 191.8 234 52.6
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 1.8e-46 190.7 141 69.5
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 1.8e-46 190.7 232 52.6
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 2.3e-46 190.3 228 53.9
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 3.9e-46 189.5 174 58.0
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 8.8e-46 188.3 240 50.4
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 2.5e-45 186.8 231 45.9
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 4.3e-45 186.0 227 48.0
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 5.7e-45 185.7 226 48.7
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 7.4e-45 185.3 229 48.9
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 7.4e-45 185.3 229 52.0
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.3e-44 184.5 221 50.2
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 2.2e-44 183.7 233 51.1
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 2.2e-44 183.7 232 53.4
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 2.2e-44 183.7 219 51.1
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 2.8e-44 183.3 237 46.4
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 4.8e-44 182.6 182 55.5
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 6.3e-44 182.2 213 52.6
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 6.3e-44 182.2 219 53.9
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 1.1e-43 181.4 227 53.3
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 3.1e-43 179.9 229 51.5
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.2e-42 177.9 231 46.8
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.0e-42 177.2 228 50.4
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 2.6e-42 176.8 229 50.2
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 4.5e-42 176.0 155 66.5
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 1.7e-41 174.1 230 50.0
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 2.9e-41 173.3 227 47.1
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 5.0e-41 172.6 229 46.7
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 5.0e-41 172.6 228 49.1
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 9.4e-40 168.3 184 53.3
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 9.4e-40 168.3 222 49.5
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.2e-39 167.9 234 46.2
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 4.7e-39 166.0 151 62.3
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 1.4e-38 164.5 229 44.1
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.1e-37 161.4 157 56.7
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 2.0e-37 160.6 232 45.7
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 4.4e-37 159.5 228 46.9
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 2.2e-36 157.1 236 44.1
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 1.1e-35 154.8 236 41.9
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 2.4e-35 153.7 223 46.2
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 7.0e-35 152.1 268 41.8
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 1.5e-34 151.0 230 45.2
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 2.0e-34 150.6 226 43.4
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 3.5e-34 149.8 232 40.9
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 5.9e-34 149.1 229 42.8
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 1.1e-32 144.8 163 49.7
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 1.1e-32 144.8 163 49.7
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 1.1e-32 144.8 155 51.0
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 1.5e-32 144.4 237 41.4
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 2.5e-32 143.7 114 64.0
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 3.2e-32 143.3 236 41.5
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 1.2e-31 141.4 228 43.9
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.7e-28 131.0 91 74.7
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 1.8e-27 127.5 185 47.0
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 1.9e-24 117.5 162 48.1
Gorai.007G223300 Gossypium raimondii HOM05D006223 ORTHO05D012503 7.5e-21 105.5 66 78.8
Gohir.A11G215100 Gossypium hirsutum HOM05D006223 ORTHO05D012503 1.7e-20 104.4 66 77.3
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 1.7e-20 104.4 163 42.9
Gorai.008G083700 Gossypium raimondii HOM05D006223 ORTHO05D012503 1.8e-19 100.9 66 75.8
Gohir.A12G077200 Gossypium hirsutum HOM05D006223 ORTHO05D012503 7.0e-19 99.0 66 74.2
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 9.1e-19 98.6 214 37.9
Cfa004129 Carpinus fangiana HOM05D006223 ORTHO05D012503 4.5e-18 96.3 65 75.4
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 4.2e-16 89.7 99 46.5
Cpa.g.sc6.20 Carica papaya HOM05D006223 ORTHO05D012503 4.7e-15 86.3 66 69.7
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 8.0e-15 85.5 131 47.3
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 2.3e-14 84.0 125 40.8
Dinv26928 Davidia involucrata HOM05D006223 ORTHO05D012503 4.0e-14 83.2 113 50.4
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.2e-14 82.8 212 33.5
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 1.2e-13 81.6 170 36.5
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.5e-13 81.3 227 35.2
Potri.012G080700 Populus trichocarpa HOM05D006223 ORTHO05D012503 2.0e-13 80.9 66 62.1
Phvul.003G235200 Phaseolus vulgaris HOM05D006223 ORTHO05D012503 9.8e-13 78.6 79 55.7
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 1.7e-12 77.8 241 32.0
RcHm_v2.0_Chr2g0107991 Rosa chinensis HOM05D006223 ORTHO05D012503 1.7e-12 77.8 66 63.6
Glyma.17G161000 Glycine max HOM05D006223 ORTHO05D012503 4.9e-12 76.3 61 65.6
Glyma.05G105400 Glycine max HOM05D006223 ORTHO05D012503 2.4e-11 73.9 61 63.9
Sabra06G0208400 Salix brachista HOM05D006223 ORTHO05D012503 4.1e-11 73.2 63 63.5
TPR.G24236 Trifolium pratense HOM05D006223 ORTHO05D012503 1.2e-10 71.6 55 63.6
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 1.6e-10 71.2 138 38.4
Lj4g0020529 Lotus japonicus HOM05D006223 ORTHO05D012503 2.0e-10 70.9 61 57.4
FAN28G0296 Fragaria x ananassa HOM05D006223 ORTHO05D012503 5.9e-10 69.3 52 69.2
Gohir.D12G075400 Gossypium hirsutum HOM05D006223 ORTHO05D012503 1.0e-09 68.6 55 65.5
Sabra12G0057600 Salix brachista HOM05D006223 ORTHO05D012503 3.8e-09 66.6 61 54.1
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.6e-07 61.2 48 58.3
Medtr4g097020 Medicago truncatula HOM05D006223 ORTHO05D012503 1.0e-06 58.5 61 49.2
Dinv01305 Davidia involucrata HOM05D020227 ORTHO05D012503 8.9e-06 55.5 104 44.2


User provided reference genes

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