Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.7e-48 195.7 99 100.0
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.3e-32 142.9 95 76.8
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 5.0e-24 114.4 95 65.3
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.8e-21 105.9 99 59.6
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 2.0e-20 102.4 62 80.6
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 7.5e-20 100.5 86 60.5
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 9.8e-20 100.1 86 61.6
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 4.9e-19 97.8 61 78.7
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 4.9e-19 97.8 75 66.7
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 6.4e-19 97.4 93 58.1
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 8.3e-19 97.1 93 58.1
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.1e-18 96.7 98 54.1
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 3.2e-18 95.1 82 62.2
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 4.1e-18 94.7 83 59.0
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 5.4e-18 94.4 98 53.1
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-17 93.2 94 53.2
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-17 93.2 94 53.2
Gohir.A02G152300 Gossypium hirsutum HOM05D045493 ORTHO05D008148 2.0e-17 92.4 144 44.4
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 2.7e-17 92.0 86 60.5
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 6.0e-17 90.9 98 53.1
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 1.0e-16 90.1 89 57.3
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 1.7e-16 89.4 63 66.7
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 2.3e-16 89.0 60 70.0
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 3.0e-16 88.6 71 62.0
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 3.9e-16 88.2 96 55.2
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.9e-16 88.2 62 67.7
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 5.0e-16 87.8 83 53.0
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 5.0e-16 87.8 78 59.0
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 6.6e-16 87.4 60 70.0
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 6.6e-16 87.4 59 71.2
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 6.6e-16 87.4 89 52.8
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 6.6e-16 87.4 98 50.0
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.5e-15 86.3 60 68.3
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 1.9e-15 85.9 59 67.8
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 1.9e-15 85.9 60 66.7
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 2.5e-15 85.5 99 50.5
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 2.5e-15 85.5 90 53.3
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 2.5e-15 85.5 61 67.2
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 5.6e-15 84.3 59 69.5
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 5.6e-15 84.3 57 70.2
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 7.3e-15 84.0 99 48.5
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.6e-14 82.8 57 70.2
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 2.8e-14 82.0 57 71.9
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 3.6e-14 81.6 92 54.3
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 6.2e-14 80.9 71 62.0
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 6.2e-14 80.9 60 63.3
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 2.3e-13 79.0 90 47.8
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 3.1e-13 78.6 57 68.4
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 4.0e-13 78.2 59 62.7
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 4.0e-13 78.2 70 54.3
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 4.0e-13 78.2 70 55.7
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 5.2e-13 77.8 82 50.0
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 8.9e-13 77.0 65 56.9
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 1.5e-12 76.3 60 56.7
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 2.0e-12 75.9 76 52.6
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 2.0e-12 75.9 56 60.7
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 2.6e-12 75.5 63 58.7
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 2.6e-12 75.5 80 50.0
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 3.4e-12 75.1 62 56.5
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 3.4e-12 75.1 65 56.9
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 4.4e-12 74.7 73 52.1
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 5.8e-12 74.3 62 56.5
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 9.9e-12 73.6 95 47.4
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 1.3e-11 73.2 76 48.7
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 1.3e-11 73.2 95 47.4
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-11 73.2 95 47.4
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-11 73.2 95 47.4
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 1.3e-11 73.2 95 48.4
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 1.7e-11 72.8 49 71.4
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.7e-11 72.8 85 45.9
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 1.7e-11 72.8 61 60.7
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 2.2e-11 72.4 60 61.7
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.9e-11 72.0 82 46.3
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 3.7e-11 71.6 60 55.0
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 3.7e-11 71.6 70 51.4
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 4.9e-11 71.2 56 58.9
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 4.9e-11 71.2 56 58.9
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 4.9e-11 71.2 98 40.8
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 4.9e-11 71.2 72 50.0
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 4.9e-11 71.2 61 52.5
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 6.4e-11 70.9 90 43.3
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 6.4e-11 70.9 71 49.3
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 8.3e-11 70.5 72 47.2
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.4e-10 69.7 70 50.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 1.4e-10 69.7 61 52.5
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 2.4e-10 68.9 72 48.6
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 3.2e-10 68.6 66 51.5
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 3.2e-10 68.6 72 45.8
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 4.1e-10 68.2 72 45.8
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 4.1e-10 68.2 49 67.3
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 4.1e-10 68.2 58 62.1
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 5.4e-10 67.8 57 54.4
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 5.4e-10 67.8 72 45.8
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 1.2e-09 66.6 48 66.7
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 1.6e-09 66.2 61 52.5
SEGI_38697 Sequoiadendron giganteum HOM05D007513 ORTHO05D008148 6.0e-09 64.3 90 41.1
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 7.8e-09 63.9 70 47.1
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 1.3e-08 63.2 57 57.9
PSO170G3772 Papaver somniferum HOM05D007513 ORTHO05D008148 2.5e-07 58.9 75 45.3
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 3.3e-07 58.5 54 53.7
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 9.5e-07 57.0 63 47.6
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 2.1e-06 55.8 44 59.1
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.1e-06 55.8 64 45.3
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.7e-06 54.7 55 47.3
Lj6g0018022 Lotus japonicus HOM05D007513 ORTHO05D008148 4.7e-06 54.7 55 47.3
A03p65340 Brassica napus HOM05D014277 ORTHO05D008148 6.2e-06 54.3 62 48.4
BraA03t15588Z Brassica rapa HOM05D014277 ORTHO05D008148 6.2e-06 54.3 62 48.4
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 8.1e-06 53.9 52 53.8
BolC7t46662H Brassica oleracea HOM05D014277 ORTHO05D008148 8.1e-06 53.9 61 49.2


User provided reference genes

Program Settings