Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.7e-112 408.7 208 100.0
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.9e-87 325.1 215 83.3
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.6e-80 303.1 213 81.2
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.4e-73 277.3 219 70.8
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.6e-72 276.6 219 70.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-71 273.5 219 69.9
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.4e-62 242.3 216 66.7
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.3e-61 240.4 220 64.1
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 4.1e-60 235.3 219 63.0
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.8e-59 231.1 220 61.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.4e-55 220.3 215 60.5
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.1e-52 208.8 228 57.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 9.2e-52 207.6 207 58.0
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.2e-51 207.2 226 57.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.2e-51 207.2 221 58.4
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-51 206.5 215 63.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.7e-51 206.1 220 58.2
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 3.5e-51 205.7 223 57.4
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.6e-51 205.3 215 63.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.8e-51 204.5 215 63.3
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.6e-48 196.8 238 58.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.2e-46 190.7 209 57.4
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.9e-45 186.0 216 55.6
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.4e-44 183.7 217 55.3
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.4e-44 183.7 210 55.7
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.9e-44 183.3 216 54.6
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.2e-44 182.6 216 54.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.7e-42 176.8 212 51.4
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.7e-42 176.8 217 51.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 5.1e-42 175.3 220 52.3
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 8.6e-42 174.5 220 51.8
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.3e-41 172.6 210 53.8
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 2.1e-40 169.9 217 52.1
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.3e-39 166.4 226 48.7
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.1e-39 166.0 226 48.7
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.9e-39 164.5 218 52.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.5e-38 163.7 220 54.1
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-38 163.3 210 51.4
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.6e-38 162.9 214 53.3
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.4e-38 162.5 211 51.7
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.8e-38 161.8 195 54.4
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 5.8e-38 161.8 214 53.7
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.8e-38 161.8 214 53.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 7.5e-38 161.4 224 49.6
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.2e-37 159.8 221 46.6
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.2e-37 159.8 221 48.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.4e-36 157.1 188 54.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.4e-36 157.1 215 49.3
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.4e-36 157.1 224 48.7
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.4e-36 156.4 222 47.3
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.1e-36 154.8 217 48.8
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-35 154.1 208 48.6
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.1e-35 153.3 216 46.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 6.0e-35 151.8 224 47.8
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 7.8e-35 151.4 220 46.8
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.3e-34 150.6 222 48.6
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.3e-34 150.6 220 48.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 5.1e-34 148.7 210 45.2
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 8.6e-34 147.9 214 46.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.9e-33 146.7 221 46.6
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.9e-33 146.7 218 45.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 4.3e-33 145.6 245 50.2
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.6e-32 142.5 198 48.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.6e-32 142.5 214 44.9
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 8.1e-32 141.4 242 49.2
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-31 141.0 212 49.1
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-31 140.6 215 46.0
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-31 140.6 219 44.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.4e-31 140.6 207 45.9
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 8.9e-31 137.9 205 46.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.5e-30 137.1 226 44.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.4e-30 136.0 215 43.7
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.4e-30 135.6 201 45.8
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 9.9e-30 134.4 215 43.3
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.4e-29 131.3 212 47.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-28 131.0 216 44.4
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.4e-28 128.6 218 43.1
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-27 127.5 216 44.0
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.2e-27 127.5 207 42.0
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 2.7e-27 126.3 213 45.1
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-27 125.9 214 43.9
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-27 125.9 214 43.9
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.5e-27 125.9 228 41.7
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.5e-27 125.9 205 41.5
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 4.6e-27 125.6 219 41.6
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.0e-26 124.4 240 40.8
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.3e-26 124.0 224 39.3
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.7e-26 123.6 213 46.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.3e-26 123.2 211 42.7
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.3e-26 123.2 229 41.0
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.9e-26 122.5 220 40.9
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 8.7e-26 121.3 226 40.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.9e-25 120.2 211 40.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 3.3e-25 119.4 215 42.3
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.3e-25 119.0 143 53.1
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.1e-24 116.7 168 48.8
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.1e-24 114.8 130 53.8
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.4e-23 114.0 212 40.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.8e-23 113.6 219 37.9
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.1e-23 112.8 231 39.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.3e-23 112.1 170 47.1
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 9.0e-23 111.3 212 41.5
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.5e-22 110.5 131 51.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-22 110.5 211 38.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.8e-22 108.6 211 39.3
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 7.6e-22 108.2 218 40.4
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 7.6e-22 108.2 216 40.7
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.3e-21 107.5 217 38.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.9e-21 106.3 145 46.9
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.9e-21 106.3 230 37.0
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.9e-21 105.5 217 38.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 6.4e-21 105.1 112 52.7
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 6.4e-21 105.1 137 51.1
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.4e-21 105.1 217 37.8
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 3.2e-20 102.8 218 39.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 4.2e-20 102.4 213 39.9
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 7.1e-20 101.7 209 37.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.3e-20 101.3 118 56.8
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.7e-19 99.8 109 51.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.0e-18 97.8 112 51.8
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.0e-18 96.3 109 51.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 3.9e-18 95.9 217 37.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.1e-18 95.5 149 43.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 6.6e-18 95.1 215 38.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.9e-17 93.6 248 35.5
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.5e-17 93.2 151 43.0
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-17 93.2 151 43.0
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.5e-17 93.2 151 43.0
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.3e-17 92.8 214 39.3
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 5.6e-17 92.0 241 39.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 5.6e-17 92.0 206 37.4
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 5.6e-17 92.0 187 41.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 7.3e-17 91.7 111 47.7
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-16 90.9 131 49.6
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-16 89.4 211 35.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 3.6e-16 89.4 211 35.5
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.2e-16 88.6 150 44.7
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 8.1e-16 88.2 218 37.2
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-15 87.8 211 35.5
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-15 87.8 211 35.5
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-15 87.4 217 34.1
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-15 87.4 213 32.4
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.4e-15 87.4 213 32.4
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-15 87.0 137 43.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.4e-15 86.7 109 46.8
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.4e-15 86.7 109 46.8
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.1e-15 86.3 208 34.1
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.0e-15 85.9 148 42.6
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.0e-15 85.9 199 33.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 9.0e-15 84.7 148 42.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-14 84.3 211 34.6
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 4.5e-14 82.4 207 33.3
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.8e-13 79.3 201 35.8
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 6.4e-13 78.6 242 29.3
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.9e-12 77.0 261 33.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 5.4e-12 75.5 109 45.0
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.6e-11 73.9 104 45.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 4.6e-11 72.4 236 33.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.6e-11 72.4 91 51.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 7.9e-11 71.6 69 58.0
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.3e-10 70.9 189 33.3
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.3e-10 70.1 200 31.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 9.6e-09 64.7 173 32.9
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.3e-08 64.3 207 29.0
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-08 63.9 149 37.6
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.8e-08 62.4 150 38.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 6.2e-08 62.0 68 47.1
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 6.2e-08 62.0 45 64.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 3.1e-07 59.7 207 29.0
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 3.1e-07 59.7 52 59.6
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 3.1e-07 59.7 48 62.5
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.0e-07 59.3 207 28.5
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 4.0e-07 59.3 148 35.8
Aqoxy3G03549 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 2.6e-06 56.6 39 66.7
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 2.6e-06 56.6 132 34.1
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 4.5e-06 55.8 49 53.1
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 5.8e-06 55.5 208 27.9
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 5.8e-06 55.5 208 27.9
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 5.8e-06 55.5 208 27.9
COL.COLO4_27938 Corchorus olitorius HOM05D001536 ORTHO05D001442 5.8e-06 55.5 48 58.3
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 9.9e-06 54.7 39 61.5


User provided reference genes

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