Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 1.8e-243 845.5 428 100.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 6.0e-207 724.2 434 85.7
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.0e-206 723.4 433 85.2
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.8e-196 688.7 388 89.2
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.4e-193 677.2 388 87.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.2e-192 675.2 433 81.8
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 9.0e-179 630.6 428 76.9
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 4.5e-178 628.2 392 81.6
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.5e-176 622.5 431 74.5
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 4.8e-172 608.2 411 75.9
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.8e-171 606.3 411 74.9
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 4.1e-171 605.1 431 73.5
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.0e-170 602.8 411 75.4
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 7.7e-170 600.9 389 76.9
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.1e-168 597.0 411 74.9
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-168 595.9 411 74.7
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 7.2e-168 594.3 397 77.1
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.1e-167 592.8 386 78.2
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 6.1e-167 591.3 429 71.6
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 8.8e-166 587.4 382 77.2
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 8.8e-166 587.4 424 69.8
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.5e-165 586.6 383 75.2
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 2.6e-165 585.9 435 71.3
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 5.7e-165 584.7 392 75.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 7.4e-165 584.3 427 69.6
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 9.7e-165 583.9 376 76.3
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 9.7e-165 583.9 369 78.6
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.2e-164 582.8 371 77.1
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 2.2e-164 582.8 371 77.9
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 2.8e-164 582.4 368 78.0
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 3.7e-164 582.0 428 70.1
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 6.3e-164 581.3 425 70.1
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 6.3e-164 581.3 425 70.4
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 6.3e-164 581.3 374 76.7
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.8e-163 579.7 358 79.9
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.4e-163 579.3 423 71.2
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.4e-163 579.3 423 71.2
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 2.4e-163 579.3 383 75.7
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.1e-163 578.6 498 63.9
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-162 577.0 431 68.9
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.0e-162 576.2 386 74.9
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 5.9e-162 574.7 384 74.5
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 5.9e-162 574.7 375 74.9
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 7.7e-162 574.3 384 74.0
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 7.7e-162 574.3 371 76.3
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.0e-161 573.9 386 73.6
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.3e-161 573.5 377 75.3
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 2.2e-161 572.8 435 70.1
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.2e-161 572.8 386 73.1
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.9e-161 572.4 373 75.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.9e-161 572.4 430 71.4
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 3.8e-161 572.0 397 72.0
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.8e-161 572.0 428 68.7
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.1e-160 570.5 396 72.7
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.5e-160 569.3 399 72.4
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 4.2e-160 568.5 428 70.1
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 9.4e-160 567.4 375 75.5
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 4.7e-159 565.1 448 66.7
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 1.4e-158 563.5 373 75.3
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.3e-158 562.8 368 75.3
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.1e-157 560.5 393 73.0
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.3e-157 558.9 361 76.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 9.7e-157 557.4 376 74.7
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.2e-156 556.2 398 69.6
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 4.8e-156 555.1 365 75.6
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 8.2e-156 554.3 389 71.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 1.1e-155 553.9 366 73.5
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.4e-155 553.5 386 72.8
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 3.1e-155 552.4 424 66.5
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 5.3e-155 551.6 378 72.8
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 7.7e-154 547.7 362 74.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 1.3e-153 547.0 365 74.2
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.2e-153 546.2 382 72.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.9e-153 545.8 367 73.0
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.1e-152 543.9 366 73.2
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 1.5e-152 543.5 369 73.4
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 7.2e-152 541.2 375 71.2
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.6e-151 538.9 368 74.2
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 4.7e-151 538.5 431 65.2
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 4.0e-150 535.4 396 67.9
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.7e-149 530.8 368 72.8
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.1e-147 527.3 348 75.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.1e-147 527.3 373 72.9
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.8e-147 526.6 373 72.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.4e-147 526.2 370 70.3
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 5.9e-146 521.5 424 65.6
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.0e-145 520.8 375 71.7
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.5e-145 518.1 371 70.9
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.5e-145 518.1 371 70.9
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 8.5e-145 517.7 379 67.3
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.3e-142 509.6 388 68.6
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.5e-141 506.9 378 70.6
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 3.3e-136 489.2 378 64.6
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 5.7e-133 478.4 395 64.1
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 7.5e-133 478.0 379 63.6
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.2e-130 470.7 402 63.4
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 2.0e-130 469.9 365 63.0
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 3.6e-127 459.1 362 62.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.3e-120 435.6 377 60.5
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 9.5e-120 434.5 369 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 2.3e-118 429.9 390 56.7
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.4e-117 426.0 369 58.0
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.7e-116 423.7 379 59.6
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 6.4e-116 421.8 370 57.0
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 3.5e-114 416.0 369 57.5
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 3.3e-112 409.5 376 58.0
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.6e-109 399.8 369 54.7
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.9e-107 393.7 374 56.4
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 7.3e-104 381.7 374 51.9
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.4e-99 367.5 267 70.0
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.3e-95 354.4 273 65.6
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.6e-95 352.8 315 59.0
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.2e-93 347.8 223 73.1
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.2e-92 343.6 367 50.1
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 6.0e-90 335.5 313 55.6
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.9e-83 313.9 177 85.3
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.9e-83 313.9 177 85.3
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 9.6e-80 301.6 390 43.6
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.4e-62 244.6 384 41.7
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.3e-60 238.0 168 70.8
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 9.4e-51 205.3 429 36.4
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.0e-49 201.8 151 66.9
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.5e-44 182.6 130 71.5
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.7e-42 176.4 167 62.3
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.5e-40 171.4 142 67.6
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 4.1e-38 163.3 395 32.9
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 8.8e-33 145.6 83 83.1
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 8.5e-28 129.0 372 31.2
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 8.6e-12 75.9 69 59.4
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-11 73.6 73 50.7
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-11 73.6 73 50.7
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 5.2e-09 66.6 108 38.0
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 6.8e-09 66.2 110 40.9
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 6.8e-09 66.2 110 40.9
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 6.8e-09 66.2 110 40.9
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 7.0e-06 56.2 291 25.1


User provided reference genes

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