Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 6.6e-41 171.4 87 100.0
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.5e-32 142.9 88 84.1
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 2.5e-32 142.9 88 84.1
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 9.6e-32 141.0 87 82.8
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 9.6e-32 141.0 88 81.8
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 2.8e-31 139.4 87 81.6
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 1.4e-30 137.1 82 85.4
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 5.8e-21 105.1 87 60.9
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.8e-21 105.1 87 60.9
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 9.3e-19 97.8 89 61.8
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 6.7e-17 91.7 91 57.1
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.9e-16 90.1 106 50.9
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 2.5e-16 89.7 96 56.2
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 9.6e-16 87.8 83 54.2
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 1.3e-15 87.4 106 50.9
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.8e-15 86.3 86 51.2
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 4.8e-15 85.5 88 56.8
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 6.2e-15 85.1 90 53.3
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 6.2e-15 85.1 83 54.2
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 6.2e-15 85.1 86 53.5
Sc18g0004060 Simmondsia chinensis HOM05D000135 ORTHO05D000203 6.2e-15 85.1 86 53.5
FvH4_1g15930 Fragaria vesca HOM05D000135 ORTHO05D000203 8.2e-15 84.7 74 64.9
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 1.1e-14 84.3 84 52.4
Hma1.2p1_0370F.1_g137840 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 1.1e-14 84.3 85 52.9
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 1.1e-14 84.3 80 57.5
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 1.4e-14 84.0 87 55.2
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.4e-14 84.0 86 51.2
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 1.4e-14 84.0 86 50.0
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.4e-14 83.2 86 51.2
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 2.4e-14 83.2 86 51.2
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 2.4e-14 83.2 84 53.6
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 4.0e-14 82.4 89 57.3
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 4.0e-14 82.4 77 53.2
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 5.3e-14 82.0 86 50.0
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 5.3e-14 82.0 84 51.2
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 6.9e-14 81.6 74 63.5
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 9.0e-14 81.3 86 47.7
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.0e-14 81.3 86 47.7
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 9.0e-14 81.3 86 50.0
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.2e-13 80.9 86 47.7
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.2e-13 80.9 86 47.7
TWI53G1405 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.2e-13 80.9 80 56.2
MD02G1171100 Malus domestica HOM05D000135 ORTHO05D000203 1.5e-13 80.5 89 56.2
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.5e-13 80.5 89 48.3
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 2.0e-13 80.1 86 47.7
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.6e-13 79.7 77 55.8
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 2.6e-13 79.7 87 51.7
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 4.5e-13 79.0 84 50.0
FAN01G2430 Fragaria x ananassa HOM05D000135 ORTHO05D000203 5.8e-13 78.6 78 48.7
FAN01G2941 Fragaria x ananassa HOM05D000135 ORTHO05D000203 5.8e-13 78.6 78 48.7
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 5.8e-13 78.6 87 54.0
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 5.8e-13 78.6 90 46.7
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 7.6e-13 78.2 86 47.7
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.0e-12 77.8 77 54.5
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.0e-12 77.8 77 55.8
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 2.2e-12 76.6 86 47.7
Sopen01g050420 Solanum pennellii HOM05D000135 ORTHO05D000203 2.2e-12 76.6 77 53.2
Solyc01g108190.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 2.9e-12 76.3 77 53.2
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 2.9e-12 76.3 88 46.6
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 3.8e-12 75.9 89 46.1
MD15G1282600 Malus domestica HOM05D000135 ORTHO05D000203 3.8e-12 75.9 93 48.4
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 3.8e-12 75.9 86 48.8
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 3.8e-12 75.9 94 52.1
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 3.8e-12 75.9 89 43.8
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 4.9e-12 75.5 86 48.8
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 4.9e-12 75.5 84 52.4
CAN.G1041.20 Capsicum annuum HOM05D000135 ORTHO05D000203 4.9e-12 75.5 77 53.2
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 4.9e-12 75.5 95 43.2
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 6.5e-12 75.1 88 45.5
Peaxi162Scf00917g00042 Petunia axillaris HOM05D000135 ORTHO05D000203 6.5e-12 75.1 84 48.8
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 6.5e-12 75.1 77 50.6
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.5e-12 75.1 86 50.0
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.5e-12 75.1 86 50.0
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 8.4e-12 74.7 89 46.1
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 8.4e-12 74.7 77 53.2
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 8.4e-12 74.7 94 52.1
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 1.1e-11 74.3 86 45.3
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 1.4e-11 73.9 86 45.3
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 1.4e-11 73.9 72 58.3
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 1.4e-11 73.9 95 44.2
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.9e-11 73.6 77 53.2
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 2.5e-11 73.2 80 47.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.5e-11 73.2 80 47.5
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 2.5e-11 73.2 84 47.6
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 2.5e-11 73.2 86 47.7
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 3.2e-11 72.8 88 44.3
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 3.2e-11 72.8 86 45.3
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.2e-11 72.4 86 45.3
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 4.2e-11 72.4 86 43.0
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 5.5e-11 72.0 85 45.9
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 87 48.3
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 87 48.3
CAN.G165.18 Capsicum annuum HOM05D000135 ORTHO05D000203 7.1e-11 71.6 78 48.7
CsaV3_7G008650 Cucumis sativus L. HOM05D000135 ORTHO05D000203 7.1e-11 71.6 74 47.3
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 7.1e-11 71.6 86 43.0
Lj5P209T45 Lonicera japonica HOM05D000135 ORTHO05D000203 7.1e-11 71.6 84 45.2
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 9.3e-11 71.2 86 44.2
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 9.3e-11 71.2 86 45.3
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 1.2e-10 70.9 88 43.2
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 1.2e-10 70.9 87 47.1
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 1.2e-10 70.9 98 41.8
Sed0018642 Sechium edule HOM05D000135 ORTHO05D000203 1.2e-10 70.9 73 46.6
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 1.6e-10 70.5 72 52.8
MSTRG.15389 Avicennia marina HOM05D000135 ORTHO05D000203 1.6e-10 70.5 88 45.5
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 1.6e-10 70.5 78 50.0
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 2.1e-10 70.1 67 55.2
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 2.1e-10 70.1 86 44.2
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 2.1e-10 70.1 78 43.6
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 2.7e-10 69.7 78 48.7
MELO3C018445.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.7e-10 69.7 74 45.9
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 2.7e-10 69.7 78 47.4
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.5e-10 69.3 80 48.8
ClCG02G005880 Citrullus lanatus HOM05D000135 ORTHO05D000203 4.6e-10 68.9 74 45.9
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 4.6e-10 68.9 76 44.7
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 6.1e-10 68.6 86 48.8
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 6.1e-10 68.6 84 45.2
Prupe.7G134500 Prunus persica HOM05D000135 ORTHO05D000203 7.9e-10 68.2 61 57.4
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.9e-10 68.2 77 48.1
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 1.0e-09 67.8 87 47.1
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 1.3e-09 67.4 86 44.2
Hma1.2p1_0461F.1_g157890 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 1.8e-09 67.0 69 52.2
CANSAT01G1352 Cannabis sativa HOM05D000135 ORTHO05D000203 2.3e-09 66.6 87 41.4
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 2.3e-09 66.6 78 43.6
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 2.3e-09 66.6 90 43.3
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 2.3e-09 66.6 90 43.3
Psat2g166920 Pisum sativum HOM05D000135 ORTHO05D000203 2.3e-09 66.6 87 46.0
FAN23G1378 Fragaria x ananassa HOM05D000135 ORTHO05D000203 3.0e-09 66.2 41 73.2
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 3.0e-09 66.2 59 52.5
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 3.9e-09 65.9 78 46.2
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 6.7e-09 65.1 90 42.2
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 6.7e-09 65.1 90 42.2
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 6.7e-09 65.1 90 42.2
SalBow5G1733 Salvia bowleyana HOM05D000135 ORTHO05D000203 6.7e-09 65.1 90 42.2
SalBow5G5503 Salvia bowleyana HOM05D000135 ORTHO05D000203 6.7e-09 65.1 90 42.2
MSTRG.20153 Avicennia marina HOM05D000135 ORTHO05D000203 1.1e-08 64.3 78 44.9
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.5e-08 63.9 88 45.5
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 1.5e-08 63.9 90 42.2
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 1.5e-08 63.9 88 43.2
Nn5g30257 Nelumbo nucifera HOM05D000135 ORTHO05D000203 1.5e-08 63.9 73 46.6
Nitab4.5_0006001g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.5e-08 63.9 63 46.0
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.9e-08 63.5 67 49.3
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 1.9e-08 63.5 67 49.3
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 2.5e-08 63.2 90 41.1
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 2.5e-08 63.2 90 41.1
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 2.5e-08 63.2 90 41.1
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 2.5e-08 63.2 90 41.1
AUR62013838 Chenopodium quinoa HOM05D000135 ORTHO05D000203 2.5e-08 63.2 77 42.9
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 3.3e-08 62.8 76 47.4
AT2G15680 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 3.3e-08 62.8 90 41.1
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 3.3e-08 62.8 90 41.1
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 3.3e-08 62.8 89 47.2
RcHm_v2.0_Chr2g0105321 Rosa chinensis HOM05D000135 ORTHO05D000203 3.3e-08 62.8 67 49.3
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 4.3e-08 62.4 90 41.1
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 4.3e-08 62.4 83 39.8
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.3e-08 62.4 43 65.1
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 5.7e-08 62.0 90 40.0
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.4e-08 61.6 67 47.8
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 7.4e-08 61.6 86 40.7
ClCG02G012820 Citrullus lanatus HOM05D000135 ORTHO05D000203 9.7e-08 61.2 74 41.9
Ah.11g040630 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.6e-07 60.5 78 42.3
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 2.8e-07 59.7 61 47.5
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 4.8e-07 58.9 48 56.2
Eucgr.I00935 Eucalyptus grandis HOM05D000135 ORTHO05D000203 6.3e-07 58.5 63 46.0
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 1.1e-06 57.8 75 48.0
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 1.8e-06 57.0 75 48.0
THA.LOC104807357 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 1.8e-06 57.0 80 36.2
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 6.9e-06 55.1 89 38.2
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 9.0e-06 54.7 76 39.5


User provided reference genes

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