Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 0.0e+00 1318.9 657 100.0
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 2.2e-309 1065.1 657 81.6
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.0e-277 959.9 657 74.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.3e-273 944.9 657 74.6
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 2.4e-271 938.7 657 74.3
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.0e-269 933.3 657 73.8
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 4.9e-192 675.2 696 52.7
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.3e-188 662.1 688 51.9
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.8e-181 640.2 692 49.6
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.5e-174 615.9 677 51.0
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 3.0e-173 612.8 683 48.5
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.3e-172 609.4 685 49.5
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.1e-170 604.4 676 50.1
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 3.5e-166 589.3 674 50.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 6.7e-165 585.1 675 48.4
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 2.5e-164 583.2 712 46.9
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.3e-164 582.4 674 49.3
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.1e-162 577.8 676 48.1
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 2.4e-162 576.6 693 47.5
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.1e-162 576.2 693 46.5
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 7.6e-161 571.6 685 47.7
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.0e-160 571.2 704 47.4
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.5e-159 566.6 663 48.9
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.3e-157 560.8 682 47.7
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 3.0e-157 559.7 599 49.6
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 2.0e-153 547.0 682 45.3
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.9e-152 543.1 663 47.7
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.1e-150 537.0 671 45.6
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.0e-149 534.6 671 43.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.0e-148 530.4 670 44.6
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 3.3e-148 529.6 673 44.6
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.4e-145 519.6 670 44.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 2.9e-144 516.5 685 42.2
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 3.6e-142 509.6 517 51.5
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 3.6e-142 509.6 687 40.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 6.7e-141 505.4 627 46.6
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 8.8e-141 505.0 674 41.5
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 3.1e-138 496.5 668 43.1
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 7.0e-138 495.4 676 41.3
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 7.7e-137 491.9 679 42.7
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.8e-133 480.7 676 44.2
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.1e-130 471.5 660 41.8
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 5.3e-130 469.2 660 43.8
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 2.7e-129 466.8 565 45.5
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 3.5e-129 466.5 669 42.9
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.7e-128 464.2 695 41.7
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 9.4e-127 458.4 680 41.6
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.6e-126 456.4 682 42.1
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 8.0e-126 455.3 675 41.8
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.3e-125 453.8 705 40.9
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 6.3e-123 445.7 672 42.1
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 8.3e-123 445.3 671 41.7
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.7e-121 440.3 704 40.5
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.3e-120 437.2 555 45.0
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 2.3e-120 437.2 685 40.6
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 3.8e-120 436.4 679 39.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.3e-119 433.3 678 40.3
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 4.2e-119 433.0 668 40.9
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.6e-118 431.0 678 39.4
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.1e-118 430.6 692 40.8
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.8e-118 430.3 702 40.0
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 8.9e-117 425.2 689 38.9
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.7e-115 421.0 669 39.6
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 4.9e-115 419.5 659 40.8
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.4e-114 417.9 698 38.7
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 2.4e-114 417.2 669 39.8
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 3.1e-114 416.8 547 45.2
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 5.4e-114 416.0 672 38.7
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 7.0e-114 415.6 667 39.9
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.2e-113 414.8 586 42.8
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.0e-112 411.8 586 43.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 2.3e-112 410.6 662 39.9
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.5e-111 407.1 606 41.7
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 1.2e-110 404.8 671 38.3
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.6e-110 403.3 744 37.8
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 4.7e-110 402.9 653 39.7
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 9.8e-108 395.2 498 45.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.8e-106 391.0 657 38.7
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.1e-106 389.8 670 37.2
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 5.0e-104 382.9 667 37.3
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 3.6e-102 376.7 601 38.1
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.4e-101 374.8 659 36.7
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 1.2e-100 371.7 662 37.8
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.3e-99 368.2 705 35.7
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.7e-97 360.5 675 36.6
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.2e-91 340.9 708 34.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 2.9e-91 340.5 561 39.0
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.7e-91 340.1 429 44.5
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.9e-90 337.8 443 44.7
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.4e-85 321.6 408 44.4
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.3e-83 315.1 626 36.6
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 6.4e-83 312.8 676 34.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 5.8e-76 289.7 698 31.8
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.4e-74 285.0 698 31.5
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 3.2e-74 283.9 361 43.2
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.3e-72 278.5 685 32.0
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 8.7e-72 275.8 411 41.8
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 7.1e-66 256.1 306 48.7
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.8e-62 243.4 386 40.4
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 7.1e-58 229.6 319 41.1
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.0e-48 199.1 195 55.9
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.5e-42 177.9 375 33.6
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.5e-39 168.7 151 56.3
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.1e-33 148.3 137 54.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.3e-24 118.2 139 46.8
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.2e-20 105.9 98 56.1
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.7e-19 102.1 473 25.2
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.6e-17 94.4 222 30.2
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.6e-17 94.4 81 59.3
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.6e-17 94.4 81 59.3
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 4.7e-17 94.0 576 23.6
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.0e-16 91.3 396 28.5
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.6e-12 79.0 51 68.6
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.0e-11 76.3 173 32.9
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 2.9e-11 74.7 435 23.7
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 7.2e-10 70.1 118 36.4
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 9.4e-10 69.7 113 33.6
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.0e-08 64.7 57 59.6
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 4.4e-07 60.8 251 25.1
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.3e-06 59.3 30 86.7
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 1.3e-06 59.3 30 86.7


User provided reference genes

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