Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.1e-216 755.7 492 100.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.9e-178 628.6 490 73.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 4.5e-158 562.0 508 68.3
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 5.0e-157 558.5 494 69.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.4e-153 545.4 490 70.4
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.4e-153 545.4 492 67.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.5e-153 544.7 490 70.4
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.8e-153 544.3 490 70.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.2e-152 543.1 492 69.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.3e-152 541.6 492 68.9
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 7.5e-129 464.9 493 59.2
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.7e-128 463.8 481 60.5
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.2e-128 463.4 491 61.5
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.4e-127 460.7 480 61.5
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.9e-127 460.3 494 61.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 3.5e-126 456.1 480 58.5
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.1e-124 451.1 460 58.5
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.9e-124 450.3 498 63.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 9.5e-124 448.0 479 56.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.6e-123 446.0 466 62.4
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.3e-120 437.6 484 57.6
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.1e-119 434.5 480 54.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 7.1e-119 431.8 487 54.2
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.1e-119 431.8 487 54.4
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 7.1e-119 431.8 487 54.4
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.2e-118 431.0 479 54.1
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.2e-118 431.0 487 56.7
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.1e-118 430.3 422 58.5
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 4.6e-118 429.1 491 59.7
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.3e-117 426.8 473 54.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.0e-117 426.4 481 60.9
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.0e-117 426.4 465 60.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.1e-116 424.5 479 56.6
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.9e-116 423.7 462 58.2
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 6.2e-115 418.7 483 56.3
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.1e-114 417.9 495 58.6
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.4e-114 417.5 474 59.9
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.1e-114 416.4 460 58.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 3.4e-113 412.9 499 53.9
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.4e-113 412.9 461 57.3
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.8e-113 412.1 460 59.1
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.2e-112 410.2 498 55.6
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 6.4e-112 408.7 482 54.4
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 8.4e-112 408.3 509 56.4
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.2e-110 404.4 505 58.0
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.6e-110 404.1 484 55.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.7e-110 403.3 485 52.0
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 3.5e-110 402.9 486 55.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.0e-109 401.4 513 56.7
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.3e-109 401.0 493 55.0
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 6.6e-109 398.7 459 55.6
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.1e-108 397.9 493 55.6
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 9.6e-108 394.8 459 53.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.6e-107 394.0 498 57.6
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.1e-107 393.7 454 56.2
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.5e-105 387.5 491 51.7
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.0e-105 387.1 498 50.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.0e-105 387.1 486 59.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.6e-105 386.7 498 50.4
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.6e-105 386.7 423 59.6
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 5.8e-105 385.6 514 54.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.8e-105 385.6 480 54.4
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-104 384.4 587 46.8
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.7e-104 384.0 493 51.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.4e-104 381.7 458 57.2
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-103 380.6 498 50.0
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.9e-103 380.6 492 54.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.4e-103 380.2 458 57.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 2.4e-103 380.2 460 52.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 5.4e-103 379.0 497 53.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 7.1e-103 378.6 539 50.3
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.3e-103 378.3 496 49.8
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.6e-102 377.5 530 51.7
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.7e-102 376.7 491 51.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 3.5e-102 376.3 503 50.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.5e-102 376.3 499 54.9
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.8e-101 374.0 500 55.4
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 3.0e-101 373.2 505 55.0
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.9e-101 372.9 491 51.5
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 8.7e-101 371.7 494 55.3
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.6e-99 367.5 496 52.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.8e-99 365.9 503 52.5
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 4.8e-99 365.9 488 53.3
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 4.0e-98 362.8 465 54.6
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 6.9e-98 362.1 499 52.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 9.0e-98 361.7 490 53.5
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.2e-97 361.3 452 59.5
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 7.6e-97 358.6 521 52.2
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.6e-97 358.6 500 51.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.8e-96 356.3 448 55.4
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.9e-95 354.0 459 53.2
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.1e-95 352.1 497 52.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 9.3e-95 351.7 434 57.6
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-94 350.5 425 55.8
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-94 350.5 468 52.4
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 2.7e-94 350.1 492 52.0
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.5e-92 343.6 461 50.1
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.3e-92 342.8 476 54.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-90 338.2 473 55.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.0e-89 334.0 491 51.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 8.4e-88 328.6 475 45.9
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.6e-86 324.3 379 51.5
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.0e-85 321.6 462 48.9
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.0e-85 320.1 445 51.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.9e-84 317.4 480 46.9
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.5e-84 317.0 339 60.5
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 8.2e-83 312.0 362 53.9
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 3.2e-79 300.1 473 52.6
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.2e-78 298.1 478 48.5
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.4e-77 294.7 469 52.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.8e-77 294.3 476 49.6
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.1e-76 291.6 582 39.2
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.3e-76 290.0 407 54.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.7e-75 287.7 247 70.9
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 9.1e-74 282.0 520 39.6
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 6.5e-72 275.8 270 60.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 2.5e-71 273.9 503 47.1
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.3e-68 263.5 474 43.5
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.4e-66 258.1 266 56.4
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.9e-63 247.7 482 40.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.7e-62 243.8 290 65.2
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 3.0e-61 240.4 431 49.7
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 7.0e-58 229.2 473 37.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.9e-56 223.8 436 41.1
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.2e-55 220.3 286 50.0
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 4.2e-55 219.9 397 49.6
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.5e-47 194.9 468 36.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 9.8e-36 155.6 184 52.2
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.1e-34 152.1 443 30.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.1e-29 134.0 445 30.1
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.4e-28 130.2 275 36.7
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.1e-26 125.6 236 42.4
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.2e-22 112.1 92 63.0
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.8e-21 108.2 66 78.8
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 3.4e-20 104.0 76 71.1
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 7.5e-20 102.8 133 54.1
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 3.7e-19 100.5 173 38.7
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 8.3e-19 99.4 442 29.4
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.2e-18 95.9 174 39.1
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 6.6e-16 89.7 193 37.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.2e-14 85.5 193 44.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.6e-14 85.1 185 37.8
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 4.7e-14 83.6 193 37.3
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.8e-13 81.6 82 58.5
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-13 80.9 100 48.0
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.4e-12 77.0 309 26.9
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 9.9e-12 75.9 180 35.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.9e-11 73.6 147 42.2
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.1e-10 72.4 276 37.0
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.6e-09 68.6 333 27.3
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.0e-09 66.6 151 45.0
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.7e-08 65.1 70 50.0
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 5.1e-08 63.5 154 33.8
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.5e-07 61.2 415 26.5


User provided reference genes

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