Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G044100 Theobroma cacao HOM05D007898 ORTHO05D010010 2.0e-89 332.4 166 100.0
Gohir.A02G162400 Gossypium hirsutum HOM05D007898 ORTHO05D010010 2.8e-67 258.8 167 75.4
Gohir.D03G018100 Gossypium hirsutum HOM05D007898 ORTHO05D010010 6.2e-67 257.7 167 74.9
Gohir.D04G029100 Gossypium hirsutum HOM05D007898 ORTHO05D010010 1.8e-66 256.1 167 74.9
Gorai.012G033200 Gossypium raimondii HOM05D007898 ORTHO05D010010 1.9e-63 246.1 175 71.4
Gohir.D04G023600 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.2e-63 245.4 172 71.5
Gohir.D04G023900 Gossypium hirsutum HOM05D007898 ORTHO05D010010 2.7e-62 242.3 175 70.3
Gohir.A05G386500 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.3e-60 235.3 167 71.3
CiPaw.02G014000 Carya illinoinensis HOM05D007898 ORTHO05D010010 3.4e-57 225.3 166 65.7
QL06p044475 Quercus lobata HOM05D007898 ORTHO05D010010 2.2e-56 222.6 165 66.1
Sabra07G0028800 Salix brachista HOM05D007898 ORTHO05D010010 7.1e-55 217.6 161 66.5
Gorai.003G018300 Gossypium raimondii HOM05D007898 ORTHO05D010010 2.7e-54 215.7 173 67.1
Cfa004248 Carpinus fangiana HOM05D007898 ORTHO05D010010 4.6e-54 214.9 168 64.9
Potri.007G032900 Populus trichocarpa HOM05D007898 ORTHO05D010010 6.0e-54 214.5 161 67.1
Manes.12G096600 Manihot esculenta HOM05D007898 ORTHO05D010010 8.1e-51 204.1 167 62.3
CANSAT01G0863 Cannabis sativa HOM05D007898 ORTHO05D010010 4.0e-50 201.8 169 60.9
TWI73G0930 Tripterygium wilfordii HOM05D007898 ORTHO05D010010 4.0e-50 201.8 164 62.2
Prupe.7G146700 Prunus persica HOM05D007898 ORTHO05D010010 1.5e-49 199.9 174 62.1
RcHm_v2.0_Chr2g0103011 Rosa chinensis HOM05D007898 ORTHO05D010010 3.8e-48 195.3 167 60.5
FAN28G1054 Fragaria x ananassa HOM05D007898 ORTHO05D010010 1.1e-47 193.7 166 60.2
FAN23G0801 Fragaria x ananassa HOM05D007898 ORTHO05D010010 4.2e-47 191.8 166 59.6
GSVIVG01019045001 Vitis vinifera HOM05D007898 ORTHO05D010010 7.1e-47 191.0 165 61.8
PGR142G0285 Punica granatum HOM05D007898 ORTHO05D010010 4.6e-46 188.3 166 56.6
MD15G1271500 Malus domestica HOM05D007898 ORTHO05D010010 6.0e-46 188.0 167 61.7
CsaV3_6G042630 Cucumis sativus L. HOM05D007898 ORTHO05D010010 3.0e-45 185.7 170 55.9
Sed0027812 Sechium edule HOM05D007898 ORTHO05D010010 6.6e-45 184.5 167 56.3
ClCG01G016310 Citrullus lanatus HOM05D007898 ORTHO05D010010 1.5e-44 183.3 169 54.4
MELO3C007502.2 Cucumis melo HOM05D007898 ORTHO05D010010 4.3e-44 181.8 168 56.5
FvH4_1g14340 Fragaria vesca HOM05D007898 ORTHO05D010010 1.3e-43 180.3 166 57.8
arahy.Tifrunner.gnm1.ann1.P18VIJ Arachis hypogaea HOM05D007898 ORTHO05D010010 2.1e-43 179.5 159 57.9
TAR381G0528 Trochodendron aralioides HOM05D007898 ORTHO05D010010 4.8e-43 178.3 167 56.3
THA.LOC104819816 Tarenaya hassleriana HOM05D007898 ORTHO05D010010 6.9e-42 174.5 167 55.1
CSS0004703 Camellia sinensis var. sinensis HOM05D007898 ORTHO05D010010 2.0e-41 172.9 173 54.9
Eucgr.K01101 Eucalyptus grandis HOM05D007898 ORTHO05D010010 9.9e-41 170.6 166 52.4
CSS0023760 Camellia sinensis var. sinensis HOM05D007898 ORTHO05D010010 1.3e-40 170.2 172 54.1
TPR.G31555 Trifolium pratense HOM05D007898 ORTHO05D010010 4.9e-40 168.3 161 53.4
AL4G13750 Arabidopsis lyrata HOM05D007898 ORTHO05D010010 8.4e-40 167.5 168 51.8
AT2G23755 Arabidopsis thaliana HOM05D007898 ORTHO05D010010 8.4e-40 167.5 166 53.0
PSO170G4740 Papaver somniferum HOM05D007898 ORTHO05D010010 8.4e-40 167.5 164 53.7
Hma1.2p1_0261F.1_g104820 Hydrangea macrophylla HOM05D007898 ORTHO05D010010 4.2e-39 165.2 153 58.8
CARHR114600 Cardamine hirsuta HOM05D007898 ORTHO05D010010 7.9e-38 161.0 168 51.2
Thhalv10000478m.g Eutrema salsugineum HOM05D007898 ORTHO05D010010 7.9e-38 161.0 192 47.9
Nn1g05126 Nelumbo nucifera HOM05D007898 ORTHO05D010010 1.3e-37 160.2 166 53.6
Dinv26786 Davidia involucrata HOM05D007898 ORTHO05D010010 2.3e-37 159.5 130 66.2
Carub.0004s0293 Capsella rubella HOM05D007898 ORTHO05D010010 3.0e-37 159.1 164 51.2
Ciclev10027359m.g Citrus clementina HOM05D007898 ORTHO05D010010 3.9e-37 158.7 132 65.9
Oeu043831.1 Olea europaea HOM05D007898 ORTHO05D010010 2.1e-35 152.9 157 49.7
arahy.Tifrunner.gnm1.ann1.376QVY Arachis hypogaea HOM05D007898 ORTHO05D010010 3.1e-34 149.1 128 60.9
FAN26G2880 Fragaria x ananassa HOM05D007898 ORTHO05D010010 4.0e-34 148.7 135 58.5
Migut.K00847 Erythranthe guttata HOM05D007898 ORTHO05D010010 9.0e-34 147.5 157 51.0
Sopen02g034650 Solanum pennellii HOM05D007898 ORTHO05D010010 4.9e-32 141.7 157 50.3
SalBow1G4022 Salvia bowleyana HOM05D007898 ORTHO05D010010 8.4e-32 141.0 156 48.7
ATR0053G039 Amborella trichopoda HOM05D007898 ORTHO05D010010 2.5e-31 139.4 160 47.5
Peaxi162Scf00535g00419 Petunia axillaris HOM05D007898 ORTHO05D010010 9.3e-31 137.5 167 47.3
PGSC0003DMG400010085 Solanum tuberosum HOM05D007898 ORTHO05D010010 9.3e-31 137.5 157 48.4
Nitab4.5_0004932g0020 Nicotiana tabacum HOM05D007898 ORTHO05D010010 1.2e-30 137.1 157 49.0
Nitab4.5_0000483g0020 Nicotiana tabacum HOM05D007898 ORTHO05D010010 2.1e-30 136.3 157 47.8
Ah.03g142230 Amaranthus hybridus HOM05D007898 ORTHO05D010010 6.0e-30 134.8 155 47.7
CAN.G836.11 Capsicum annuum HOM05D007898 ORTHO05D010010 7.9e-30 134.4 160 48.1
Solyc02g089960.3 Solanum lycopersicum HOM05D007898 ORTHO05D010010 3.9e-29 132.1 155 49.0
Cc07_g05300 Coffea canephora HOM05D007898 ORTHO05D010010 2.5e-28 129.4 147 49.7
Lj7P13T39 Lonicera japonica HOM05D007898 ORTHO05D010010 1.3e-27 127.1 127 53.5
A09p56800 Brassica napus HOM05D007898 ORTHO05D010010 4.8e-27 125.2 138 50.0
CDE02G3439 Ceratophyllum demersum HOM05D007898 ORTHO05D010010 4.8e-27 125.2 144 47.2
AUR62008035 Chenopodium quinoa HOM05D007898 ORTHO05D010010 3.1e-26 122.5 139 46.8
SHI08702 Sapria himalayana HOM05D007898 ORTHO05D010010 9.0e-26 120.9 109 57.8
BolC8t51548H Brassica oleracea HOM05D007898 ORTHO05D010010 1.5e-25 120.2 139 48.9
C08p39760 Brassica napus HOM05D007898 ORTHO05D010010 4.5e-25 118.6 139 48.9
Haze_15152 Corylus avellana HOM05D007898 ORTHO05D010010 1.0e-24 117.5 172 42.4
AUR62003213 Chenopodium quinoa HOM05D007898 ORTHO05D010010 3.5e-22 109.0 130 43.8
Lj4g0012479 Lotus japonicus HOM05D007898 ORTHO05D010010 6.1e-22 108.2 108 51.9
SGA_v2.0_scaffold62G21534 Striga asiatica HOM05D007898 ORTHO05D010010 1.8e-21 106.7 138 47.1
EL10Ac6g14865 Beta vulgaris HOM05D007898 ORTHO05D010010 3.0e-21 105.9 137 44.5
BraA09t41069Z Brassica rapa HOM05D007898 ORTHO05D010010 3.0e-21 105.9 116 51.7
Hund14127 Selenicereus undatus HOM05D007898 ORTHO05D010010 3.7e-19 99.0 163 38.7
FAN19G2518 Fragaria x ananassa HOM05D007898 ORTHO05D010010 8.2e-19 97.8 97 54.6
SEGI_13764 Sequoiadendron giganteum HOM05D007898 ORTHO05D010010 1.2e-17 94.0 107 47.7
TAR374G1689 Trochodendron aralioides HOM05D007898 ORTHO05D010010 2.6e-17 92.8 81 56.8
Actinidia30992 Actinidia chinensis HOM05D007898 ORTHO05D010010 2.2e-16 89.7 169 38.5
CDE02G3192 Ceratophyllum demersum HOM05D007898 ORTHO05D010010 9.4e-15 84.3 122 45.1
Medtr8g078730 Medicago truncatula HOM05D007898 ORTHO05D010010 9.4e-07 57.8 136 30.9


User provided reference genes

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