Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1425.2 698 100.0
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1367.1 698 94.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1365.5 698 94.3
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1301.2 698 88.5
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1287.7 698 88.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1274.2 698 87.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1272.7 698 86.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1268.1 698 87.0
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1265.8 696 89.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1263.8 694 87.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1261.5 694 87.0
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1255.7 699 86.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1252.3 700 86.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1247.3 698 85.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1242.3 694 85.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1241.5 698 84.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1241.5 695 84.2
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1241.1 698 84.4
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1239.2 695 83.9
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 698 84.1
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 698 84.7
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1235.3 698 83.7
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1234.6 699 87.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1232.6 695 84.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1229.5 695 83.6
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1226.5 695 83.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1225.7 697 83.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1224.5 698 83.1
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 694 83.6
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1223.0 699 83.0
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1219.9 720 82.5
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1219.9 698 83.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1216.8 698 82.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 698 82.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 698 82.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1212.6 695 82.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1212.6 694 82.7
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 693 83.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1211.1 698 81.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 695 83.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 694 82.7
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 693 83.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 695 83.3
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 695 83.2
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1206.4 677 84.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1206.4 695 83.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 694 82.6
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 695 81.4
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 697 81.6
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 695 81.4
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1202.6 698 81.9
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 698 81.2
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 694 82.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 698 81.4
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 695 82.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1199.1 694 82.0
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1197.2 694 81.7
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 692 81.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 694 81.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 698 81.2
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 698 82.5
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 695 80.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 699 81.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 694 82.1
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 695 80.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 694 80.1
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 694 81.8
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 695 81.4
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 694 80.3
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 695 80.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 692 80.9
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 698 80.5
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 698 81.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 694 79.1
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 694 82.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 700 79.1
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 696 79.5
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 696 79.5
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1169.5 694 78.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 687 78.2
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 719 77.9
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 698 79.8
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 693 80.4
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 693 79.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 585 94.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 698 80.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 713 75.5
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 718 76.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 741 75.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 747 73.5
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 698 76.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1122.8 615 87.3
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 698 78.9
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 647 80.8
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 681 79.0
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 681 78.7
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1103.2 695 77.4
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1102.4 699 75.3
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 0.0e+00 1089.7 641 83.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 678 76.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-303 1046.2 689 72.4
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 4.3e-303 1044.3 705 71.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.1e-297 1025.4 702 70.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.4e-292 1007.7 581 83.8
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.1e-274 949.9 712 69.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 4.3e-271 937.9 540 83.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 6.1e-249 864.4 699 60.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 2.3e-248 862.4 565 74.2
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.6e-228 796.6 471 81.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-228 796.2 705 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-228 796.2 705 56.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.6e-228 795.8 697 55.5
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.2e-226 788.5 706 55.5
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.6e-223 779.2 702 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.0e-219 765.0 711 55.7
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.5e-194 682.9 386 83.4
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 3.9e-163 579.3 720 44.6
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.3e-153 547.7 378 70.4
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.1e-144 516.5 506 55.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 9.1e-112 408.7 248 79.8
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 6.5e-110 402.5 765 34.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.1e-104 383.3 344 59.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.2e-103 381.7 814 32.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.4e-99 368.2 269 65.8
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-77 295.4 247 60.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.5e-77 295.0 251 62.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 8.1e-76 289.3 179 75.4
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-72 277.7 184 73.9
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.6e-71 273.5 166 75.9
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.9e-65 254.2 235 57.0
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.1e-63 248.1 618 31.2
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.3e-53 213.0 127 76.4
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 5.4e-48 196.8 138 73.2
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.1e-44 184.9 145 69.0
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.3e-36 159.1 95 78.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.1e-35 156.0 236 41.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.5e-32 144.8 75 89.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.2e-32 144.4 76 88.2
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.6e-26 124.8 84 65.5
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 5.3e-19 100.5 85 55.3
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 6.1e-15 87.0 86 53.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.3e-13 81.3 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 2.8e-12 78.2 50 72.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 2.3e-06 58.5 33 78.8


User provided reference genes

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