Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 2.4e-204 715.3 374 100.0
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 7.9e-163 577.4 373 81.5
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 2.6e-161 572.4 373 78.8
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.3e-160 570.1 373 78.3
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.8e-160 568.9 373 78.0
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 2.3e-146 522.7 336 78.9
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 1.9e-132 476.5 364 69.0
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 9.5e-132 474.2 372 67.2
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 6.3e-128 461.5 373 65.7
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 7.0e-127 458.0 352 67.0
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 1.3e-125 453.8 364 64.0
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 6.6e-125 451.4 373 64.1
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 2.1e-123 446.4 355 65.4
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 3.6e-123 445.7 299 73.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.8e-122 443.4 370 62.7
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 2.3e-122 443.0 370 61.4
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 1.3e-120 437.2 373 61.7
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.2e-120 436.4 332 66.6
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.4e-119 433.7 356 62.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 1.9e-119 433.3 372 60.5
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 4.1e-119 432.2 370 59.7
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 7.8e-118 427.9 370 60.8
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.3e-117 427.2 374 59.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 2.3e-117 426.4 290 71.0
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.0e-117 426.0 293 71.0
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.9e-117 425.6 363 62.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 6.6e-117 424.9 382 59.2
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 1.5e-116 423.7 364 62.9
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 4.3e-116 422.2 352 61.9
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.6e-115 420.2 370 60.0
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.6e-115 420.2 370 60.0
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 2.1e-115 419.9 333 65.2
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 3.6e-115 419.1 333 65.8
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 6.2e-115 418.3 374 62.3
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.8e-114 416.8 339 63.4
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 4.0e-114 415.6 357 63.6
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 4.0e-114 415.6 328 64.6
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.2e-113 414.1 387 57.1
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 4.4e-113 412.1 312 67.9
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 9.8e-113 411.0 320 64.4
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.3e-112 410.6 333 61.9
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.2e-112 409.8 372 61.3
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 3.7e-112 409.1 328 63.4
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 3.7e-112 409.1 328 63.4
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 6.4e-112 408.3 375 60.3
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 6.4e-112 408.3 375 60.3
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.9e-111 406.8 324 64.2
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 5.4e-111 405.2 324 64.2
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 1.2e-110 404.1 330 60.3
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.1e-110 403.3 302 65.9
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 2.1e-110 403.3 364 60.4
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.7e-110 402.9 349 58.7
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 4.6e-110 402.1 302 65.9
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 6.0e-110 401.7 347 60.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.3e-109 400.6 372 58.1
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.3e-109 400.6 345 58.6
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.7e-109 400.2 333 60.4
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.7e-109 400.2 359 58.2
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.7e-109 400.2 373 58.2
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.1e-108 397.5 327 63.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.9e-108 396.7 362 59.9
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 7.3e-108 394.8 373 57.6
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.2e-107 394.0 372 57.5
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 4.7e-107 392.1 344 60.8
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.7e-107 392.1 366 58.2
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 4.7e-107 392.1 373 57.1
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.1e-106 391.0 374 57.2
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.1e-106 391.0 348 58.3
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.7e-104 383.6 372 56.5
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.7e-104 383.6 360 57.8
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 2.2e-104 383.3 370 54.9
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 2.2e-104 383.3 344 59.0
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.4e-103 380.6 376 54.8
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.2e-103 379.4 375 57.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.6e-102 377.1 353 57.8
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 4.6e-102 375.6 320 58.4
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 3.0e-101 372.9 373 54.7
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 3.0e-101 372.9 342 57.3
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 5.6e-100 368.6 336 57.1
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.1e-98 364.4 322 57.8
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.2e-97 360.9 366 53.6
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 1.7e-96 357.1 329 55.3
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.9e-96 355.5 300 57.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.5e-92 344.0 363 51.5
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.2e-91 340.9 334 55.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.7e-91 339.0 263 62.7
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 8.1e-91 338.2 287 58.9
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.1e-90 337.8 337 55.5
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.1e-90 337.8 381 51.2
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 6.9e-90 335.1 343 51.0
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 9.3e-87 324.7 288 63.9
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 6.6e-85 318.5 298 55.7
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.9e-84 317.0 228 67.5
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 8.4e-80 301.6 333 50.8
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.3e-76 289.3 342 47.1
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.7e-70 270.0 229 59.0
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.1e-68 264.6 323 45.2
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 4.3e-68 262.7 330 48.2
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 9.6e-68 261.5 292 46.2
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 2.8e-67 260.0 330 48.2
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.8e-67 260.0 388 42.3
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 4.8e-67 259.2 334 43.4
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 6.2e-67 258.8 334 47.6
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 7.6e-65 251.9 293 52.6
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.1e-63 248.1 213 59.2
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 5.0e-56 222.6 259 52.1
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.2e-55 218.8 365 40.3
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 3.9e-53 213.0 255 50.2
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.5e-52 211.1 250 48.0
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 4.1e-50 203.0 265 48.3
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 2.0e-49 200.7 176 58.5
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 7.7e-49 198.7 288 42.0
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.3e-44 183.3 171 52.6
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 8.2e-43 178.7 116 64.7
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 4.1e-42 176.4 307 37.8
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.0e-41 174.1 288 37.8
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 5.0e-40 169.5 108 68.5
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.0e-37 160.2 166 49.4
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 9.7e-36 155.2 145 51.7
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 5.3e-34 149.4 125 67.2
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 4.0e-29 133.3 140 52.9
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 6.8e-29 132.5 188 42.6
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.8e-27 127.1 67 80.6
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 5.9e-25 119.4 68 76.5
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.7e-22 110.5 243 33.3
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.7e-22 109.8 113 47.8
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 1.3e-19 101.7 68 64.7
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.7e-19 100.1 67 65.7
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.8e-18 97.8 53 75.5
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.4e-18 97.4 64 62.5
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.5e-15 88.2 55 65.5
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.2e-12 78.6 131 32.1
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 5.7e-12 76.3 52 61.5
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 8.3e-11 72.4 87 41.4
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 3.5e-09 67.0 83 43.4
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 2.5e-07 60.8 60 58.3
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 7.3e-07 59.3 60 58.3


User provided reference genes

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