Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 5.0e-119 431.0 205 100.0
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 2.8e-109 398.7 205 89.3
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.1e-108 396.7 205 88.8
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 4.0e-108 394.8 205 88.3
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 2.0e-99 365.9 204 81.4
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 5.8e-99 364.4 203 82.3
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 2.2e-98 362.5 204 79.9
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 3.2e-97 358.6 204 80.9
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 2.7e-96 355.5 204 80.4
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 8.6e-95 350.5 204 77.5
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.1e-94 350.1 204 77.9
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 3.3e-94 348.6 205 80.0
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 3.3e-94 348.6 204 77.0
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 3.3e-94 348.6 204 78.4
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 5.6e-94 347.8 204 77.9
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.4e-92 343.2 204 77.0
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 1.4e-92 343.2 204 77.0
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 2.4e-92 342.4 205 81.0
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 5.2e-92 341.3 204 76.0
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 8.9e-92 340.5 204 76.0
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.0e-91 339.3 204 75.5
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.0e-91 339.3 204 75.5
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 4.4e-91 338.2 204 74.5
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.8e-91 337.8 204 75.5
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 5.8e-91 337.8 204 76.0
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 5.8e-91 337.8 204 76.5
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 7.6e-91 337.4 204 74.5
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 9.9e-91 337.0 206 77.7
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.3e-90 336.7 204 77.5
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.7e-90 336.3 204 76.0
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 4.9e-90 334.7 204 74.0
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 4.9e-90 334.7 204 74.0
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 8.4e-90 334.0 204 73.0
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.1e-89 333.6 204 73.0
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 1.4e-89 333.2 204 74.0
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.4e-89 333.2 204 75.5
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.9e-89 332.8 204 74.0
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 2.4e-89 332.4 204 73.0
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 4.2e-89 331.6 204 74.0
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 4.2e-89 331.6 204 75.5
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 2.1e-88 329.3 197 75.6
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 3.5e-88 328.6 204 75.0
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 3.5e-88 328.6 204 75.0
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 6.0e-88 327.8 204 73.5
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 2.3e-87 325.9 204 70.1
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 3.0e-87 325.5 204 70.6
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 3.0e-87 325.5 204 73.5
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 5.1e-87 324.7 199 71.9
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 2.5e-86 322.4 204 73.5
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 2.5e-86 322.4 205 70.2
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 2.5e-86 322.4 204 72.5
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 3.3e-86 322.0 203 73.4
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 7.3e-86 320.9 204 71.1
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 1.3e-85 320.1 204 71.6
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 4.8e-85 318.2 204 70.1
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 4.8e-85 318.2 204 71.1
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 6.2e-85 317.8 204 70.6
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 4.0e-84 315.1 204 70.6
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 4.0e-84 315.1 204 70.6
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 6.9e-84 314.3 204 68.6
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 6.9e-84 314.3 204 70.6
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 6.9e-84 314.3 204 70.6
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 6.9e-84 314.3 204 69.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 6.9e-84 314.3 204 69.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 1.2e-83 313.5 204 70.6
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 1.5e-83 313.2 204 70.6
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.0e-83 312.8 204 68.6
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 2.6e-83 312.4 204 69.1
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 3.8e-82 308.5 205 71.2
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 4.9e-82 308.1 204 69.6
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.4e-81 306.6 184 77.2
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 1.4e-81 306.6 205 70.7
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 7.9e-80 300.8 204 68.1
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 3.0e-79 298.9 166 80.7
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 6.7e-79 297.7 209 67.5
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 6.7e-79 297.7 204 68.1
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.5e-78 296.6 184 73.4
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 1.9e-78 296.2 204 67.6
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 5.6e-78 294.7 188 70.7
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 4.9e-74 281.6 174 74.7
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 1.1e-73 280.4 185 69.7
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 3.2e-73 278.9 183 70.5
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.1e-72 276.2 206 63.1
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 5.1e-71 271.6 163 76.1
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 7.4e-70 267.7 167 73.1
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.2e-67 260.4 168 75.6
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.5e-67 260.0 147 79.6
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 6.5e-66 254.6 205 58.0
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 8.4e-66 254.2 163 71.8
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 1.3e-63 246.9 163 69.9
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.3e-63 246.1 185 63.8
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 1.9e-62 243.0 148 75.7
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.3e-62 242.3 215 54.4
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.3e-62 242.3 215 54.4
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.6e-61 240.0 214 53.7
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 7.6e-59 231.1 151 70.2
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 6.5e-58 228.0 210 53.3
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.1e-54 217.2 148 64.9
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 4.3e-54 215.3 149 63.8
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 3.8e-50 202.2 213 46.9
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.2e-49 199.1 122 75.4
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 2.6e-46 189.5 122 69.7
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 1.5e-43 180.3 106 71.7
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 5.9e-43 178.3 106 70.8
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 6.1e-40 168.3 162 48.1
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.0e-38 163.3 147 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.3e-34 150.6 156 45.5
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 3.2e-33 146.0 168 44.0
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 4.8e-29 132.1 211 34.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 7.7e-27 124.8 277 29.2
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.9e-26 122.9 174 37.9
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 2.5e-25 119.8 107 55.1
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 5.2e-23 112.1 162 36.4
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 1.3e-18 97.4 53 86.8
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 3.6e-16 89.4 59 67.8
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 8.8e-15 84.7 54 63.0


User provided reference genes

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