Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.1e-110 403.3 197 100.0
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 5.2e-97 357.8 192 89.1
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.5e-83 313.2 192 78.6
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 5.6e-83 311.2 185 81.1
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 1.6e-82 309.7 185 80.5
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 1.5e-80 303.1 191 73.8
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 9.9e-80 300.4 191 73.3
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 2.2e-79 299.3 191 72.3
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 3.7e-79 298.5 191 73.8
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 3.7e-79 298.5 189 73.0
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.4e-78 296.6 189 71.4
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.9e-78 296.2 191 72.3
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 3.2e-78 295.4 191 72.3
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 7.1e-78 294.3 191 73.8
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 1.2e-77 293.5 185 74.1
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 1.6e-77 293.1 213 67.6
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 6.0e-77 291.2 191 71.2
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 7.8e-77 290.8 191 72.3
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 7.8e-77 290.8 191 71.7
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.0e-76 290.4 192 70.8
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.0e-76 290.4 192 71.9
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 1.0e-76 290.4 183 74.3
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.3e-76 290.0 191 71.2
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 2.3e-76 289.3 169 81.7
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.1e-75 287.0 189 71.4
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.3e-75 285.4 189 69.8
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 4.3e-75 285.0 190 70.5
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 4.3e-75 285.0 192 69.8
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 7.3e-75 284.3 190 70.5
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 7.3e-75 284.3 190 68.9
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 1.2e-74 283.5 191 71.2
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.6e-74 283.1 191 69.1
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 2.1e-74 282.7 191 69.6
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 2.8e-74 282.3 189 69.3
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 4.7e-74 281.6 190 70.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 8.1e-74 280.8 191 69.6
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.4e-73 280.0 190 71.1
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 1.4e-73 280.0 190 68.9
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.8e-73 279.6 190 67.4
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 4.0e-73 278.5 192 67.2
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 5.2e-73 278.1 191 68.6
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 2.6e-72 275.8 191 68.1
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 3.4e-72 275.4 233 59.7
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 4.4e-72 275.0 191 67.0
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 4.4e-72 275.0 189 67.2
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 1.3e-71 273.5 189 66.1
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 1.7e-71 273.1 191 68.6
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 4.9e-71 271.6 189 69.8
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 8.4e-71 270.8 191 64.9
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 1.4e-70 270.0 191 66.0
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.4e-70 270.0 191 65.4
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.4e-70 270.0 185 69.2
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 2.4e-70 269.2 187 64.7
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 3.2e-70 268.9 178 71.9
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.2e-69 266.9 189 64.6
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.2e-69 266.9 185 68.1
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 1.6e-69 266.5 191 62.8
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 2.7e-69 265.8 191 69.1
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 2.7e-69 265.8 192 64.1
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 4.6e-69 265.0 177 71.8
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 7.8e-69 264.2 191 68.1
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 3.9e-68 261.9 189 65.1
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 6.6e-68 261.2 184 66.3
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 1.1e-67 260.4 189 66.1
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 2.5e-67 259.2 191 61.3
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 2.5e-67 259.2 191 62.8
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 8.1e-66 254.2 169 67.5
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.8e-65 253.1 175 65.7
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 9.0e-65 250.8 164 72.6
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 9.0e-65 250.8 164 72.6
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 2.0e-64 249.6 153 75.2
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.6e-64 249.2 228 56.6
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 1.4e-62 243.4 160 71.2
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 1.1e-59 233.8 154 68.8
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 9.6e-59 230.7 170 63.5
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 1.3e-58 230.3 153 69.9
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 1.2e-56 223.8 206 53.4
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 4.6e-53 211.8 140 70.0
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 1.3e-52 210.3 140 69.3
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 2.2e-47 193.0 202 51.0
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 2.9e-47 192.6 122 73.8
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 2.9e-47 192.6 130 69.2
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 9.6e-43 177.6 154 57.8
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.6e-40 169.5 116 63.8
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 5.8e-40 168.3 209 45.9
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 6.5e-39 164.9 118 66.1
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 1.4e-33 147.1 103 65.0
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.8e-31 139.0 134 53.7
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 5.0e-31 138.7 90 74.4
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 6.7e-28 128.3 107 59.8
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 2.0e-27 126.7 198 39.9
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 1.7e-26 123.6 80 68.8
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 5.3e-25 118.6 71 74.6
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 2.0e-24 116.7 138 49.3
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 8.5e-23 111.3 74 70.3
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 5.5e-22 108.6 190 37.4
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 5.5e-22 108.6 130 39.2
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 7.2e-22 108.2 183 36.1
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.2e-21 107.5 72 65.3
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.2e-21 107.5 183 36.1
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 5.1e-20 102.1 183 34.4
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 5.3e-17 92.0 60 65.0
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 7.7e-16 88.2 148 40.5
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 1.0e-15 87.8 60 65.0
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.3e-15 87.4 128 42.2
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 2.7e-13 79.7 77 54.5
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 8.0e-13 78.2 172 32.6
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 1.4e-12 77.4 60 65.0
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 2.0e-08 63.5 61 50.8
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 1.1e-06 57.8 57 47.4
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 3.2e-06 56.2 33 69.7


User provided reference genes

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