Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.0e-98 362.5 184 100.0
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 4.1e-80 301.6 188 80.9
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 4.3e-69 265.0 184 73.9
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 2.8e-68 262.3 184 73.4
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 6.2e-68 261.2 184 72.8
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 1.6e-55 219.9 172 59.9
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 6.0e-55 218.0 182 58.2
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 1.7e-54 216.5 184 63.0
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 3.9e-54 215.3 183 56.8
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.1e-53 213.8 181 57.5
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 3.3e-53 212.2 181 56.9
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 3.3e-53 212.2 178 57.3
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 7.3e-53 211.1 184 55.4
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 1.6e-52 209.9 182 57.7
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 1.6e-52 209.9 177 58.2
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 3.6e-52 208.8 183 56.3
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 6.2e-52 208.0 179 58.1
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 8.1e-52 207.6 177 56.5
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 1.4e-51 206.8 182 56.0
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 1.4e-51 206.8 180 55.6
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 2.4e-51 206.1 183 56.3
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 4.0e-51 205.3 180 55.0
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 9.0e-51 204.1 180 55.6
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 4.5e-50 201.8 178 59.0
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 7.6e-50 201.1 180 55.0
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 7.6e-50 201.1 181 54.1
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.3e-49 200.3 173 57.8
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 1.7e-49 199.9 179 56.4
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 3.8e-49 198.7 169 58.6
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 4.9e-49 198.4 177 55.9
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 6.4e-49 198.0 190 55.8
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 1.1e-48 197.2 186 52.7
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 3.2e-48 195.7 182 53.8
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 4.2e-48 195.3 178 56.2
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 5.4e-48 194.9 173 56.1
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 9.3e-48 194.1 178 53.4
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 1.2e-47 193.7 181 53.6
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 1.6e-47 193.4 186 55.4
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 1.6e-47 193.4 180 51.7
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 1.6e-47 193.4 183 52.5
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 2.1e-47 193.0 176 57.4
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 2.1e-47 193.0 192 53.6
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.7e-47 192.6 170 60.0
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 2.7e-47 192.6 183 51.9
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 2.7e-47 192.6 183 51.9
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.6e-47 191.8 217 47.5
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 6.0e-47 191.4 175 57.1
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 1.0e-46 190.7 185 52.4
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.3e-46 190.3 186 52.7
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 2.3e-46 189.5 190 53.2
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 3.0e-46 189.1 176 57.4
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 3.0e-46 189.1 190 53.7
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 3.0e-46 189.1 183 55.2
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 3.9e-46 188.7 186 52.2
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 6.7e-46 188.0 186 53.2
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 6.7e-46 188.0 186 53.2
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 1.1e-45 187.2 184 51.6
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.9e-45 186.4 179 53.6
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.9e-45 186.4 179 53.6
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.5e-45 186.0 173 55.5
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 5.6e-45 184.9 171 51.5
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 5.6e-45 184.9 177 54.2
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.6e-44 183.3 185 50.8
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 3.7e-44 182.2 185 53.0
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 3.7e-44 182.2 172 49.4
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.7e-44 182.2 176 52.8
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 6.9e-43 177.9 168 55.4
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 6.9e-43 177.9 168 55.4
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 6.9e-43 177.9 160 51.9
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.5e-42 176.8 185 50.8
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 4.5e-42 175.3 193 48.2
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 1.7e-41 173.3 185 50.8
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 2.9e-41 172.6 175 50.9
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 4.9e-41 171.8 177 48.0
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 4.9e-41 171.8 169 52.7
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 1.1e-40 170.6 181 50.3
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 3.2e-40 169.1 180 47.2
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 1.2e-39 167.2 174 48.9
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 1.6e-39 166.8 181 47.5
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 2.1e-39 166.4 174 47.7
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 1.0e-38 164.1 201 46.8
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 3.0e-38 162.5 182 45.6
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.1e-37 160.6 168 50.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 3.3e-37 159.1 123 63.4
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 5.7e-37 158.3 125 60.8
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 5.7e-37 158.3 152 53.3
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 7.4e-37 157.9 167 49.1
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 9.6e-37 157.5 166 48.8
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 1.3e-36 157.1 195 41.0
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 6.2e-36 154.8 169 48.5
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 1.1e-35 154.1 177 47.5
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 5.3e-35 151.8 169 46.7
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 9.0e-35 151.0 174 49.4
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 2.9e-33 146.0 179 44.7
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 6.5e-33 144.8 95 65.3
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 7.2e-32 141.4 122 61.5
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 1.0e-30 137.5 174 43.7
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.3e-30 137.1 173 39.3
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.8e-28 129.4 86 68.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.2e-28 127.9 148 45.3
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 6.9e-27 124.8 105 54.3
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 9.0e-27 124.4 163 42.9
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.5e-26 123.6 90 61.1
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 2.6e-26 122.9 203 40.4
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 2.6e-26 122.9 203 40.4
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 5.9e-26 121.7 158 41.8
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.3e-25 120.6 80 70.0
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 3.8e-25 119.0 217 37.3
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 5.1e-22 108.6 167 38.3
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 6.7e-22 108.2 74 63.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 1.1e-21 107.5 167 43.1
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 4.1e-19 99.0 136 39.0
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 2.6e-18 96.3 95 43.2
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.9e-17 92.8 71 57.7
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.7e-15 86.3 89 51.7
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 3.6e-15 85.9 91 53.8
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 1.5e-13 80.5 75 53.3
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 1.7e-12 77.0 103 38.8
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 1.4e-11 73.9 140 34.3
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 1.9e-08 63.5 102 37.3


User provided reference genes

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