Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 8.4e-235 816.6 404 100.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 8.5e-195 683.7 404 84.7
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 8.0e-177 624.0 404 78.0
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.4e-175 618.6 404 77.5
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.2e-174 615.9 394 78.7
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-173 612.1 406 76.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.1e-173 610.5 415 75.7
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.7e-171 606.3 406 76.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 4.3e-146 521.9 408 65.7
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.6e-145 520.0 394 67.8
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.0e-144 515.4 395 67.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 5.2e-144 515.0 399 66.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.8e-144 514.6 398 66.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.5e-143 513.5 408 68.9
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.3e-142 510.4 395 66.1
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.7e-142 510.0 396 67.4
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.6e-140 503.4 394 67.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 7.8e-140 501.1 398 62.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.9e-139 498.8 395 65.8
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 3.9e-139 498.8 396 66.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 4.3e-138 495.4 396 64.4
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.3e-138 494.6 406 62.6
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 9.5e-138 494.2 399 65.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 2.1e-137 493.0 400 63.5
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.1e-137 493.0 394 64.5
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.6e-137 492.3 393 63.1
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.2e-137 491.5 399 65.2
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.1e-136 489.2 396 62.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 8.9e-136 487.6 401 61.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 8.9e-136 487.6 450 59.1
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.6e-135 486.1 392 64.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 5.8e-135 485.0 393 62.8
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-134 483.8 394 64.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 8.4e-134 481.1 399 61.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.9e-133 479.9 394 63.5
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 3.2e-133 479.2 403 63.5
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.1e-133 478.8 400 60.2
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.6e-132 475.3 393 63.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-131 472.6 408 58.8
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 6.6e-131 471.5 394 62.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 8.6e-131 471.1 398 60.6
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.5e-130 469.5 396 60.6
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.5e-130 469.5 398 60.8
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-130 469.5 398 60.8
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 7.3e-130 468.0 404 59.7
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-129 467.2 398 60.8
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.8e-129 466.1 398 62.3
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 8.1e-129 464.5 402 60.7
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.1e-128 462.6 407 61.2
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.9e-128 461.5 398 60.1
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 6.9e-128 461.5 403 59.6
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.0e-128 461.1 395 59.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.0e-127 459.9 401 60.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.6e-127 459.5 401 59.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-127 459.1 398 59.5
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-127 459.1 398 59.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 4.4e-127 458.8 402 60.9
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 4.4e-127 458.8 407 60.0
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 5.8e-127 458.4 393 60.6
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.1e-125 454.1 404 58.9
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.4e-125 453.8 398 59.8
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 2.4e-125 453.0 396 60.1
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.4e-125 453.0 400 60.8
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 3.2e-125 452.6 394 60.7
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 3.2e-125 452.6 395 59.2
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.4e-125 451.8 393 59.5
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 7.1e-125 451.4 396 60.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.3e-125 451.1 427 58.5
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.2e-124 450.7 394 60.7
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 2.1e-124 449.9 398 60.3
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.7e-124 449.5 396 60.4
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.7e-124 449.5 394 60.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 3.5e-124 449.1 406 60.3
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.3e-123 447.2 399 59.9
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 3.0e-123 446.0 393 60.3
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.1e-122 444.1 393 60.6
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.9e-122 443.4 390 59.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.6e-121 440.3 450 54.7
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 8.1e-121 438.0 402 56.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.1e-120 437.6 397 59.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.8e-120 436.8 395 58.5
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.9e-118 429.5 397 57.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.4e-118 428.3 392 59.9
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 7.4e-114 414.8 386 59.1
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 9.6e-114 414.5 401 54.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.3e-113 414.1 393 57.0
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.1e-113 413.3 404 56.9
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.8e-112 410.2 405 54.3
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 2.2e-110 403.3 376 56.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 3.8e-110 402.5 398 54.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 8.4e-110 401.4 397 54.7
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.4e-109 400.6 430 51.2
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 2.4e-109 399.8 400 56.2
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 8.7e-107 391.3 401 55.6
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 7.4e-106 388.3 401 55.4
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.6e-105 387.1 401 55.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.6e-105 387.1 321 63.2
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.1e-105 386.7 416 50.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 6.2e-105 385.2 415 50.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 6.9e-104 381.7 402 54.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.5e-103 380.6 397 51.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.4e-101 374.0 403 54.1
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 5.5e-101 372.1 412 49.3
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.6e-100 369.0 294 61.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.3e-96 355.5 458 47.2
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.9e-95 352.1 289 63.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 6.1e-92 342.0 327 56.0
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.1e-90 337.8 452 43.4
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-86 324.3 374 48.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.7e-86 323.9 266 62.0
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-83 313.5 246 66.7
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 9.7e-82 308.1 416 47.4
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.8e-81 305.8 403 42.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-79 300.8 408 44.9
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.2e-78 297.0 419 42.7
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.9e-77 293.9 380 46.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 4.1e-72 276.2 444 39.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.1e-69 268.1 412 40.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 3.0e-67 260.0 455 36.7
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.1e-61 241.5 226 58.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 4.2e-61 239.6 401 39.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 2.2e-57 227.3 305 48.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 9.1e-56 221.9 173 59.5
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.3e-51 207.2 268 41.0
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.8e-48 197.6 178 53.4
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-44 183.7 158 57.0
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-43 181.0 168 53.6
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 4.4e-42 176.4 110 72.7
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.4e-40 170.6 177 55.9
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.2e-40 170.2 203 50.7
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 4.1e-40 169.9 174 48.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-35 154.1 183 50.3
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.6e-31 141.4 282 34.8
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.3e-22 110.9 84 67.9
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-19 101.7 149 37.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.9e-17 94.0 70 62.9
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.8e-17 93.6 134 41.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.4e-16 91.7 117 46.2
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 5.4e-16 89.7 65 67.7
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.4e-16 89.7 65 67.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.5e-15 87.0 53 77.4
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 9.6e-13 79.0 101 48.5
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 9.6e-13 79.0 101 48.5
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 4.4e-10 70.1 82 43.9
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 9.9e-10 68.9 254 26.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.4e-09 66.2 163 34.4


User provided reference genes

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