Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.5e-306 1054.7 543 100.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 2.5e-197 692.6 550 65.5
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 3.3e-194 682.2 546 65.9
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.2e-193 679.5 550 65.5
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 5.0e-190 668.3 555 65.6
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 6.5e-190 667.9 546 64.7
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 4.2e-189 665.2 541 64.1
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 6.1e-188 661.4 552 63.4
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 6.7e-187 657.9 554 63.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.5e-183 646.7 540 62.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 7.7e-183 644.4 544 63.8
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.9e-182 642.5 545 62.2
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.9e-182 642.5 554 61.4
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.8e-182 642.1 540 61.7
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.5e-182 641.3 539 62.2
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.5e-182 641.3 539 62.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.9e-181 639.8 544 63.1
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 2.5e-181 639.4 534 64.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.5e-181 638.3 539 61.8
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.7e-180 635.2 553 59.5
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 6.1e-180 634.8 544 62.1
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.3e-179 632.9 541 62.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.0e-179 632.5 689 53.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 3.9e-179 632.1 542 60.3
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 7.4e-178 627.9 555 60.4
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.7e-177 625.5 546 61.2
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.8e-177 625.2 547 60.3
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.1e-176 624.0 542 61.3
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.0e-174 617.5 551 60.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.7e-174 616.7 545 60.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.9e-174 615.9 545 59.8
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 3.8e-174 615.5 545 60.0
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.9e-173 613.2 552 59.8
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 7.2e-173 611.3 552 59.6
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 2.6e-170 602.8 534 61.2
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 5.7e-170 601.7 530 59.8
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 5.7e-170 601.7 554 58.5
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 9.7e-170 600.9 546 60.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.8e-168 596.7 549 59.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 4.5e-167 592.0 508 61.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.8e-166 589.0 528 59.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.6e-164 583.6 543 58.4
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.1e-164 583.2 547 58.0
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 2.1e-164 583.2 547 57.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 3.6e-164 582.4 541 57.9
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.0e-162 576.6 543 58.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 2.8e-161 572.8 543 58.7
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.7e-161 572.4 548 57.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.6e-159 567.0 546 57.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 3.5e-159 565.8 577 54.9
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.2e-158 563.1 535 58.1
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.8e-158 562.4 535 57.8
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.9e-157 560.1 552 55.8
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.9e-157 560.1 543 55.4
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 4.2e-157 558.9 536 57.1
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 9.4e-157 557.8 535 57.8
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 4.7e-156 555.4 538 55.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.7e-154 548.5 534 55.4
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 9.8e-154 547.7 534 56.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.3e-153 547.4 534 55.2
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 3.7e-153 545.8 535 54.8
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 3.7e-153 545.8 534 55.2
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.1e-152 544.3 538 55.8
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 7.0e-152 541.6 465 60.4
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.6e-151 540.4 547 53.9
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.7e-151 539.7 547 55.2
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 2.3e-150 536.6 543 54.3
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.1e-149 534.3 545 54.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 9.5e-149 531.2 579 50.3
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.2e-148 530.8 535 54.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.1e-148 530.0 541 54.5
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-148 530.0 545 55.0
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.5e-146 523.9 534 52.8
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 2.0e-146 523.5 543 54.3
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 4.4e-146 522.3 534 52.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 9.8e-146 521.2 545 53.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 3.2e-144 516.2 535 53.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.1e-144 515.8 443 61.2
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 7.0e-144 515.0 535 53.6
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 7.0e-144 515.0 534 53.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 9.2e-144 514.6 535 53.6
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.0e-143 513.5 534 53.0
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 7.8e-143 511.5 535 52.0
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.7e-140 502.3 538 52.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 6.8e-139 498.4 544 52.4
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.5e-138 495.0 479 56.4
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.0e-134 484.6 516 52.9
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 8.6e-134 481.5 390 62.6
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.6e-132 477.2 481 53.6
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 3.7e-129 466.1 535 48.8
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 6.0e-127 458.8 484 53.3
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.7e-121 440.7 547 46.4
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 5.4e-120 435.6 353 62.3
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.6e-119 434.1 461 52.5
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.5e-119 433.0 384 62.5
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.2e-115 419.1 546 47.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.7e-111 406.8 564 43.6
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 7.8e-111 405.2 358 59.2
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 4.0e-99 366.3 326 59.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.0e-95 352.4 378 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.3e-93 346.7 557 40.2
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 6.2e-92 342.4 557 41.5
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.7e-89 334.3 281 62.6
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 3.2e-88 330.1 506 41.3
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.8e-86 324.3 566 38.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.0e-86 323.6 383 46.5
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.0e-78 298.5 322 51.9
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 6.7e-78 295.8 440 42.3
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.7e-73 281.2 218 64.7
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.7e-71 273.9 432 38.0
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 4.6e-71 273.1 260 57.7
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.1e-71 272.7 277 54.9
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.1e-64 251.9 343 44.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 5.5e-64 249.6 278 50.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.6e-63 248.1 262 52.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.1e-59 233.8 427 37.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.1e-59 232.3 165 69.7
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.3e-57 228.4 264 52.3
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-53 215.3 228 49.6
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.1e-51 205.7 160 65.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.0e-41 175.6 155 60.0
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-39 168.7 159 59.7
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.7e-36 158.3 192 50.0
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.1e-35 155.6 122 65.6
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 5.9e-34 149.8 119 63.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.3e-33 148.7 235 41.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.0e-33 146.7 235 40.9
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-32 145.2 145 53.8
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.9e-32 144.8 235 40.4
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-19 101.7 96 59.4
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 9.2e-19 99.4 185 37.8
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 9.5e-16 89.4 105 50.5
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 9.2e-11 72.8 133 39.1
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.6e-10 70.5 90 45.6
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.6e-10 70.5 90 45.6
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 8.1e-07 59.7 81 39.5
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.3e-06 58.2 93 38.7


User provided reference genes

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