Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 5.5e-284 980.3 507 100.0
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 5.8e-225 784.3 508 74.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.7e-222 775.4 508 75.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 4.6e-222 774.6 509 76.0
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.3e-221 773.1 507 73.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 3.0e-221 771.9 507 73.4
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.1e-220 770.0 517 74.7
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.6e-220 767.7 507 73.0
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.8e-217 757.7 511 75.0
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.3e-216 756.5 512 75.2
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.2e-216 755.7 508 73.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.8e-216 755.0 509 71.1
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.1e-215 753.4 514 72.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.2e-215 751.9 507 71.6
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.1e-214 749.2 513 74.1
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.6e-214 748.0 509 70.9
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.0e-214 747.7 514 71.8
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.0e-213 746.9 518 75.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.0e-213 746.9 508 71.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.1e-212 743.4 564 66.7
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.5e-212 743.0 515 73.8
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 4.3e-212 741.5 509 73.3
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 2.1e-211 739.2 512 73.0
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.8e-210 736.1 509 70.3
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 4.0e-210 734.9 507 72.8
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 5.3e-210 734.6 507 71.6
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.5e-209 733.0 516 75.4
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.4e-209 731.9 507 70.2
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.4e-209 731.9 519 68.2
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 5.8e-209 731.1 511 69.7
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 1.7e-208 729.6 507 70.6
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.7e-208 729.6 520 69.0
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.2e-208 729.2 516 71.3
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 2.2e-208 729.2 507 69.8
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 6.4e-208 727.6 507 69.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 8.4e-208 727.2 507 69.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.6e-206 723.0 508 68.9
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 7.9e-206 720.7 525 67.0
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.3e-205 719.9 507 69.8
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.8e-205 719.5 505 70.3
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.3e-205 719.2 510 68.4
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.9e-205 718.4 513 68.4
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 4.3e-204 714.9 510 69.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-203 713.0 510 69.8
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.8e-203 712.2 510 70.2
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 2.8e-203 712.2 516 70.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.1e-203 710.7 510 70.4
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.8e-202 709.5 488 72.3
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.9e-202 707.6 510 69.4
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.6e-201 705.7 510 69.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 5.5e-199 698.0 508 66.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 2.7e-198 695.7 512 65.4
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.7e-198 695.7 522 67.0
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.9e-198 694.1 592 61.5
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.3e-197 692.6 508 71.5
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 8.7e-197 690.6 514 66.3
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 1.5e-196 689.9 508 71.7
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.5e-196 689.1 507 66.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 8.2e-195 684.1 529 68.6
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.7e-192 676.4 527 64.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.9e-192 674.9 517 68.9
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 8.4e-192 674.1 512 64.1
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.4e-191 673.3 517 63.8
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.5e-191 672.5 523 67.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.6e-190 669.8 562 63.9
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.7e-189 664.5 523 67.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 8.7e-189 664.1 511 65.8
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.1e-188 663.7 516 68.2
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.5e-188 662.5 516 68.0
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.3e-188 662.1 516 68.0
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.3e-188 662.1 516 68.0
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 3.3e-188 662.1 539 61.2
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.2e-187 659.4 508 67.1
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 3.7e-187 658.7 516 67.6
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.2e-183 645.6 534 64.4
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.2e-182 643.7 517 61.5
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.1e-182 642.9 504 64.3
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.1e-182 642.9 526 60.5
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 7.9e-182 641.0 514 60.7
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.8e-179 632.5 395 77.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.3e-176 623.6 555 62.2
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 5.0e-176 621.7 532 63.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 9.7e-172 607.4 464 67.5
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 9.1e-170 600.9 505 60.2
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 4.5e-169 598.6 457 66.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.2e-167 591.3 472 61.7
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.9e-159 566.6 365 75.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 9.7e-156 554.3 505 56.8
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.4e-154 549.7 403 66.0
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.0e-152 544.3 354 74.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 3.6e-134 482.6 381 65.6
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 9.2e-122 441.4 510 51.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.7e-120 437.2 468 54.5
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 9.5e-119 431.4 275 74.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.4e-114 415.6 532 42.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 4.7e-110 402.5 511 42.3
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.1e-109 401.4 550 42.7
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 7.6e-100 368.6 296 62.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.7e-97 360.1 494 44.7
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 9.6e-95 351.7 255 67.5
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.6e-92 343.6 554 37.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.1e-87 328.2 260 63.1
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-78 296.6 235 66.8
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 6.3e-78 295.8 204 72.5
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 2.0e-76 290.8 210 68.1
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.9e-74 284.3 462 43.7
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.6e-73 281.2 236 65.7
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.1e-69 266.5 258 45.7
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.9e-69 265.8 222 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 1.7e-59 234.6 228 50.0
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.6e-55 220.7 491 29.1
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.7e-55 219.5 221 52.5
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.7e-49 199.9 171 58.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 4.1e-45 186.8 248 46.0
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 5.9e-44 183.0 394 31.7
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.1e-42 178.7 146 59.6
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.4e-40 171.8 180 53.3
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 2.9e-35 154.1 258 39.5
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 2.1e-33 147.9 509 29.7
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 3.0e-32 144.1 82 84.1
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 8.6e-27 125.9 67 82.1
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.0e-25 119.4 69 71.0
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 5.2e-24 116.7 165 42.4
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 4.4e-23 113.6 127 54.3
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 7.0e-21 106.3 121 45.5
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.5e-18 97.8 98 52.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 7.3e-18 96.3 185 37.3
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-14 85.1 52 65.4
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 2.1e-09 68.2 91 45.1
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 2.9e-06 57.8 38 63.2


User provided reference genes

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