Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.1e-120 434.5 230 100.0
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.9e-75 285.8 234 70.5
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.5e-74 282.7 230 70.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 4.2e-74 282.0 232 69.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 9.4e-74 280.8 230 69.1
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 2.1e-73 279.6 229 67.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.1e-73 279.6 248 66.1
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.4e-72 276.9 229 69.9
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.3e-72 276.2 229 68.1
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.0e-72 275.4 230 68.3
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 6.8e-72 274.6 229 69.0
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 1.7e-70 270.0 230 68.3
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.2e-70 269.6 233 67.4
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 2.8e-70 269.2 230 67.0
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.8e-70 269.2 226 68.1
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 8.3e-70 267.7 225 68.0
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 3.1e-69 265.8 232 67.7
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 3.1e-69 265.8 229 67.2
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 9.1e-69 264.2 231 68.0
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 9.1e-69 264.2 230 68.7
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 5.9e-68 261.5 229 66.4
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 5.9e-68 261.5 229 66.4
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.0e-67 260.8 229 66.4
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.7e-67 260.0 228 66.7
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 3.8e-67 258.8 230 66.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 6.6e-67 258.1 236 66.9
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 5.5e-66 255.0 234 64.1
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.2e-65 253.8 230 67.4
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 2.8e-65 252.7 229 64.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.8e-64 250.0 230 65.2
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 8.9e-64 247.7 231 64.1
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.2e-63 247.3 228 64.9
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.5e-63 246.9 232 64.2
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 3.4e-63 245.7 229 65.1
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 4.4e-63 245.4 242 63.2
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 9.8e-63 244.2 230 63.9
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-62 243.8 237 62.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 2.8e-62 242.7 251 61.8
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 6.3e-62 241.5 236 62.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 6.3e-62 241.5 228 64.5
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 8.3e-62 241.1 239 63.6
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.1e-61 240.7 253 59.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.1e-61 240.7 228 64.9
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.4e-61 239.6 243 60.1
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.2e-60 237.3 238 60.9
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.2e-60 237.3 242 60.3
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 4.5e-60 235.3 243 60.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.9e-59 232.6 278 55.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.1e-58 230.7 258 57.4
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.6e-57 226.9 238 58.4
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 4.7e-57 225.3 272 54.4
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 8.0e-57 224.6 231 58.0
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.8e-56 223.4 231 58.4
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 3.1e-56 222.6 232 58.6
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 6.8e-56 221.5 230 59.1
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 8.9e-56 221.1 229 58.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 3.4e-55 219.2 229 58.5
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.4e-55 218.8 230 58.7
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.7e-52 209.5 230 56.1
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.1e-50 204.1 239 55.2
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.1e-50 204.1 215 58.6
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.9e-50 203.4 195 65.1
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 4.3e-50 202.2 190 64.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 9.5e-50 201.1 229 56.3
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.6e-49 200.3 150 72.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 4.0e-48 195.7 192 63.5
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 4.4e-47 192.2 189 64.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 7.5e-47 191.4 230 55.2
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 9.8e-47 191.0 190 63.2
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 2.2e-46 189.9 190 62.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.7e-46 189.1 240 52.5
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.4e-45 187.2 194 59.8
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 5.4e-45 185.3 204 59.3
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.7e-43 180.3 94 94.7
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.3e-43 179.9 190 61.6
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.3e-43 179.9 92 96.7
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-43 179.5 92 95.7
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 3.0e-43 179.5 187 57.2
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.0e-43 179.5 92 95.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 3.9e-43 179.1 92 94.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 6.6e-43 178.3 100 89.0
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.1e-42 177.6 92 94.6
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.5e-42 177.2 190 57.4
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.9e-42 176.8 92 95.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 2.5e-42 176.4 92 96.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 5.6e-42 175.3 230 50.9
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 7.3e-42 174.9 196 58.7
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.6e-41 172.6 92 93.5
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.1e-40 171.0 93 92.5
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 2.6e-39 166.4 283 42.8
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 4.9e-38 162.2 286 42.3
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-37 160.6 92 88.0
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.4e-37 160.6 92 88.0
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.2e-36 157.5 95 90.5
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 4.6e-36 155.6 102 81.4
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.5e-34 149.8 190 55.3
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.2e-33 147.5 178 52.2
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 2.8e-33 146.4 233 45.9
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.7e-33 145.6 249 43.8
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.0e-31 140.2 230 43.0
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.2e-30 136.7 257 44.0
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 3.8e-30 136.0 338 36.1
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.1e-28 130.2 233 44.6
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 2.7e-28 129.8 312 38.5
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.3e-27 127.5 100 72.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 5.1e-27 125.6 102 70.6
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.1e-25 120.2 161 54.0
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 5.3e-24 115.5 63 87.3
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 6.4e-22 108.6 173 43.9
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-21 107.8 302 36.8
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.4e-21 106.7 176 47.2
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 7.1e-21 105.1 176 41.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.6e-20 104.0 194 42.3
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 3.0e-19 99.8 52 96.2
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.5e-18 97.4 185 38.4
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 7.3e-18 95.1 138 50.0
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-16 91.3 140 49.3
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.0e-16 89.4 175 38.9
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 5.8e-15 85.5 76 64.5
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 5.8e-15 85.5 76 64.5
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 3.8e-14 82.8 40 95.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 6.0e-12 75.5 54 74.1
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.3e-11 74.3 92 53.3
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.9e-10 70.5 41 85.4
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 2.8e-09 66.6 138 42.0
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.4e-08 64.3 42 81.0
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 3.1e-08 63.2 133 38.3
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.2e-07 61.2 40 72.5
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.5e-07 60.8 35 88.6
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.7e-06 57.4 110 40.0
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 6.4e-06 55.5 144 35.4


User provided reference genes

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