Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.8e-172 607.8 325 100.0
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.7e-133 478.0 301 86.4
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 7.1e-75 285.0 330 55.2
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.0e-73 281.2 327 54.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.0e-73 279.6 317 54.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.1e-73 278.9 325 53.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.5e-72 276.6 319 53.3
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.6e-72 275.4 330 52.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 9.9e-69 264.6 328 54.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.1e-67 261.2 339 53.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 4.2e-67 259.2 328 53.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 9.3e-67 258.1 339 54.3
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.4e-62 243.4 333 52.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.0e-62 242.7 312 48.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.4e-61 239.6 342 49.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.2e-60 236.9 328 47.9
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.4e-56 221.9 324 48.5
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.8e-55 219.9 318 48.1
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.8e-55 219.9 321 47.7
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 6.2e-55 218.8 324 43.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.1e-54 218.0 318 47.8
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.4e-54 217.6 318 44.3
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.1e-54 216.5 317 48.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.0e-54 216.1 271 54.2
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 9.0e-54 214.9 322 45.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 9.0e-54 214.9 320 42.8
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.8e-52 209.5 327 43.1
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.4e-51 207.6 319 44.5
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.2e-51 206.5 316 42.7
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.6e-50 202.6 317 45.1
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 7.9e-50 201.8 337 44.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.0e-49 201.4 328 46.6
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.8e-49 200.7 328 42.4
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.9e-49 199.5 334 45.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.1e-49 199.1 319 46.7
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.7e-49 198.4 319 44.8
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.7e-49 198.4 334 45.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.1e-48 198.0 326 45.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.1e-48 198.0 334 44.9
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.5e-48 196.8 322 48.8
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.4e-48 195.3 319 45.8
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.6e-48 194.9 334 41.6
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.3e-47 194.5 329 44.1
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.1e-47 193.7 323 43.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.1e-47 193.7 314 44.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.8e-47 193.4 319 44.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.7e-47 193.0 334 44.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.2e-47 192.2 314 39.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.1e-46 191.4 323 38.1
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.1e-46 191.4 319 44.5
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.4e-46 190.3 318 45.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.4e-46 190.3 314 39.2
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 5.3e-46 189.1 323 39.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.5e-45 187.6 327 42.5
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.6e-45 186.8 315 46.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.5e-45 186.0 323 40.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.5e-45 186.0 325 44.9
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.8e-45 185.7 323 37.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.3e-44 184.5 320 43.8
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.8e-44 183.0 316 38.0
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 8.4e-44 181.8 324 43.2
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 8.4e-44 181.8 325 46.2
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.4e-44 181.8 323 39.6
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.1e-43 181.4 326 43.3
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-43 181.4 324 42.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.1e-43 181.4 324 42.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.1e-43 181.4 317 42.9
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.4e-43 181.0 332 41.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-43 180.3 325 43.1
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-43 180.3 325 43.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 4.2e-43 179.5 331 38.4
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 5.5e-43 179.1 326 44.5
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.6e-42 177.6 322 38.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.7e-42 176.8 325 42.2
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.5e-42 176.4 316 40.2
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.8e-41 174.1 320 40.3
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.8e-41 174.1 329 43.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.3e-41 173.7 316 41.5
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 3.9e-41 172.9 326 41.1
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 3.9e-41 172.9 316 41.5
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.7e-41 172.2 334 42.5
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 8.7e-41 171.8 330 42.7
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-40 171.4 326 41.7
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-40 171.0 334 41.9
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.4e-40 168.7 309 39.5
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 7.4e-40 168.7 331 44.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 9.6e-40 168.3 337 40.7
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 9.6e-40 168.3 337 39.2
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.6e-39 167.5 317 40.1
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 2.8e-39 166.8 272 48.9
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.4e-38 163.7 335 39.7
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.1e-38 163.3 309 42.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.1e-38 162.9 313 39.6
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 5.3e-38 162.5 318 34.3
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.9e-38 162.2 246 44.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 9.0e-38 161.8 326 41.1
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.5e-37 161.0 301 41.2
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 5.9e-37 159.1 332 37.3
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.2e-36 157.1 298 38.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.2e-36 157.1 321 36.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 5.0e-36 156.0 309 37.2
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-35 154.5 312 39.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.9e-35 154.1 310 41.3
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.7e-34 150.2 315 40.0
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.7e-34 150.2 315 40.0
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.6e-34 149.8 312 37.5
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.6e-34 149.4 318 35.5
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.1e-34 149.1 315 40.0
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-33 147.5 311 37.3
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.3e-33 147.1 340 39.1
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 8.7e-33 145.2 311 39.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.9e-32 144.1 312 34.0
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.9e-32 144.1 331 32.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.5e-32 143.7 310 39.4
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.7e-32 142.5 305 35.7
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-31 141.4 293 38.2
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 3.7e-31 139.8 319 35.4
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 8.2e-31 138.7 310 33.2
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-30 138.3 159 48.4
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 5.3e-30 136.0 317 38.2
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.2e-29 134.8 309 39.8
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.5e-29 134.4 303 36.0
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.9e-28 130.2 298 34.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.8e-28 129.8 321 38.3
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 5.0e-28 129.4 299 34.1
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 5.0e-28 129.4 304 34.2
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.5e-28 128.6 321 36.1
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.1e-27 128.3 182 42.3
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 4.2e-27 126.3 274 42.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.2e-27 126.3 296 38.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.5e-27 125.9 316 31.0
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.6e-26 124.4 304 33.2
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.1e-26 124.0 283 36.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.6e-26 123.2 258 40.3
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-25 121.7 232 42.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.0e-25 121.7 258 40.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.5e-24 117.9 325 29.8
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.7e-23 114.4 304 35.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 9.1e-22 108.6 272 34.2
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.4e-21 106.7 304 34.5
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 5.9e-21 105.9 250 38.4
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 7.7e-21 105.5 314 36.0
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.0e-20 105.1 310 30.6
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.3e-20 104.8 269 35.3
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.2e-20 104.0 304 37.5
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 8.5e-20 102.1 268 38.1
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.2e-19 100.1 294 32.3
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 4.7e-18 96.3 279 38.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.8e-17 94.4 199 38.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.6e-16 90.5 197 36.0
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 7.0e-14 82.4 154 38.3
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 1.6e-13 81.3 314 27.4
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 2.2e-07 60.8 322 32.3


User provided reference genes

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