Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.4e-52 209.1 226 100.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.0e-19 101.3 80 63.8
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 6.5e-19 98.6 79 62.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 8.5e-19 98.2 74 63.5
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 5.5e-18 95.5 76 63.2
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.2e-17 94.4 70 61.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 3.6e-17 92.8 78 60.3
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.0e-16 91.3 78 60.3
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.8e-16 90.5 80 60.0
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 6.8e-16 88.6 75 60.0
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.2e-15 87.8 75 61.3
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 9.8e-15 84.7 80 55.0
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 9.8e-15 84.7 75 54.7
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 6.3e-14 82.0 80 57.5
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.1e-13 81.3 80 52.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.4e-13 80.1 76 46.1
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 4.5e-12 75.9 69 55.1
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.9e-12 75.5 75 50.7
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.7e-11 73.9 61 59.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.7e-11 73.9 61 59.0
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.7e-11 73.9 61 59.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.9e-11 73.2 80 50.0
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.0e-11 72.4 70 54.3
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 6.5e-11 72.0 79 44.3
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.5e-10 70.9 83 45.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 1.9e-10 70.5 78 48.7
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 2.5e-10 70.1 63 52.4
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 2.5e-10 70.1 77 48.1
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 4.2e-10 69.3 55 58.2
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 9.4e-10 68.2 58 46.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 9.4e-10 68.2 80 43.8
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 9.4e-10 68.2 78 47.4
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.6e-09 67.4 86 41.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.6e-09 67.4 74 43.2
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.6e-09 67.4 58 53.4
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.6e-09 67.4 82 47.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.6e-09 67.4 82 47.6
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 2.1e-09 67.0 58 50.0
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 2.1e-09 67.0 58 50.0
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.1e-09 67.0 60 53.3
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 2.1e-09 67.0 77 41.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 2.1e-09 67.0 56 55.4
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 3.6e-09 66.2 58 50.0
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 6.1e-09 65.5 76 42.1
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.1e-09 65.5 60 48.3
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 6.1e-09 65.5 50 66.0
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 8.0e-09 65.1 64 50.0
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 1.4e-08 64.3 76 42.1
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.3e-08 63.5 52 57.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.0e-08 63.2 77 42.9
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.0e-08 63.2 55 50.9
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 6.8e-08 62.0 76 43.4
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 8.8e-08 61.6 74 44.6
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.5e-07 60.8 81 38.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.5e-07 60.8 75 42.7
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.0e-07 60.5 58 51.7
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.6e-07 60.1 56 48.2
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.4e-07 59.7 59 47.5
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 3.4e-07 59.7 83 38.6
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 3.4e-07 59.7 63 49.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.4e-07 59.7 77 40.3
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 5.7e-07 58.9 55 47.3
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 7.5e-07 58.5 55 45.5
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 7.5e-07 58.5 79 43.0
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 1.7e-06 57.4 54 51.9
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.7e-06 57.4 48 54.2
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.7e-06 57.4 77 37.7
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.7e-06 57.4 80 37.5
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 1.7e-06 57.4 87 36.8
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.7e-06 57.4 74 43.2
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 1.7e-06 57.4 74 43.2
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.2e-06 57.0 55 45.5
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 2.2e-06 57.0 69 46.4
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 2.2e-06 57.0 56 46.4
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.2e-06 57.0 78 41.0
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.8e-06 56.6 56 44.6
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 2.8e-06 56.6 57 49.1
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.8e-06 56.6 59 45.8
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.8e-06 56.6 71 39.4
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 3.7e-06 56.2 77 37.7
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 3.7e-06 56.2 48 52.1
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.7e-06 56.2 48 52.1
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.7e-06 56.2 56 44.6
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 3.7e-06 56.2 83 36.1
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 4.9e-06 55.8 80 41.2
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.9e-06 55.8 59 45.8
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 4.9e-06 55.8 56 50.0
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.9e-06 55.8 54 48.1
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 4.9e-06 55.8 79 43.0
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 6.3e-06 55.5 47 55.3
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 6.3e-06 55.5 55 43.6
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.3e-06 55.5 48 52.1
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 6.3e-06 55.5 70 40.0
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.3e-06 55.5 84 36.9
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 8.3e-06 55.1 49 49.0


User provided reference genes

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