Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.4e-135 485.0 235 100.0
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.6e-79 299.3 225 66.2
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 3.4e-79 298.9 226 66.4
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.1e-77 293.9 235 64.7
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.1e-77 293.9 235 63.4
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 3.2e-77 292.4 229 62.0
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 4.2e-77 292.0 238 60.9
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 5.5e-77 291.6 190 71.6
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 2.1e-76 289.7 237 62.9
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.7e-76 289.3 190 70.5
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 3.0e-75 285.8 228 62.3
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 5.1e-75 285.0 227 62.1
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 6.7e-75 284.6 185 69.2
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 6.7e-75 284.6 190 68.4
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.1e-74 283.9 237 59.1
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-74 282.7 228 61.8
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-74 282.7 228 61.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.7e-74 281.6 191 66.0
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 7.4e-74 281.2 188 69.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.8e-73 279.3 232 60.8
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 8.2e-73 277.7 183 68.3
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 3.4e-71 272.3 238 58.4
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 7.6e-71 271.2 189 65.6
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 2.9e-70 269.2 189 64.0
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.0e-70 268.5 236 58.5
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.5e-70 268.1 242 55.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 3.2e-69 265.8 236 56.4
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.5e-69 265.0 235 57.9
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 2.7e-68 262.7 236 55.1
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 4.6e-68 261.9 177 67.2
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 7.9e-68 261.2 176 68.8
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.0e-67 260.8 225 55.6
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.3e-67 260.4 236 56.8
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 3.0e-67 259.2 169 66.9
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 5.1e-67 258.5 189 65.1
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 5.1e-67 258.5 188 63.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 8.7e-67 257.7 235 56.6
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.5e-66 256.9 225 55.1
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 1.9e-66 256.5 189 60.8
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 2.5e-66 256.1 200 60.0
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 3.3e-66 255.8 187 61.0
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 4.3e-66 255.4 176 67.6
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 7.4e-66 254.6 188 60.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 9.7e-66 254.2 198 61.1
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.3e-65 253.8 177 65.5
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 3.7e-65 252.3 189 63.0
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.4e-64 250.4 169 62.7
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.4e-64 250.4 188 60.1
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.9e-64 248.1 233 54.1
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 6.9e-64 248.1 177 64.4
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.2e-63 247.3 190 62.1
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.2e-63 247.3 191 58.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 4.5e-63 245.4 188 59.0
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 1.3e-62 243.8 225 52.4
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.3e-62 243.8 190 60.0
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.2e-62 243.0 230 55.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.0e-62 241.9 232 53.0
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.1e-61 240.7 188 57.4
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 2.5e-61 239.6 183 56.8
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.5e-61 239.6 188 57.4
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 3.2e-61 239.2 168 63.1
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 5.5e-61 238.4 172 61.6
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 7.2e-61 238.0 183 58.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.2e-61 238.0 231 53.2
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 9.4e-61 237.7 222 51.8
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.2e-60 237.3 186 58.6
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.6e-60 236.9 166 63.9
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.6e-60 236.9 169 63.3
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 6.1e-60 235.0 167 61.7
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 1.0e-59 234.2 227 51.5
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.0e-59 234.2 168 61.3
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.0e-59 234.2 202 53.5
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.0e-59 234.2 202 53.5
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.0e-59 234.2 208 52.4
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.0e-59 234.2 222 50.9
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.9e-59 232.3 219 51.1
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-58 230.7 168 58.9
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 3.3e-58 229.2 202 53.0
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 3.3e-58 229.2 202 53.0
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.3e-58 228.8 224 47.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 4.3e-58 228.8 167 58.1
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 9.7e-58 227.6 216 53.2
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 9.7e-58 227.6 171 60.2
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 4.8e-57 225.3 202 51.5
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 4.8e-57 225.3 206 52.4
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 5.3e-56 221.9 225 52.4
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.0e-54 217.6 160 62.5
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 6.5e-54 214.9 193 50.8
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.5e-53 211.8 207 52.7
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.1e-48 195.7 175 54.3
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 4.1e-48 195.7 175 53.7
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 5.5e-45 185.3 120 72.5
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.6e-44 183.7 148 60.1
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 2.2e-41 173.3 170 52.4
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.1e-40 169.5 230 39.6
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 7.7e-39 164.9 164 50.0
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 4.0e-35 152.5 181 48.1
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.9e-29 133.7 179 36.3
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.0e-27 127.9 118 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 3.0e-27 126.3 135 44.4
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.5e-26 124.0 236 34.3
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.5e-21 107.5 221 31.7
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.8e-19 100.5 88 48.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 6.8e-19 98.6 171 32.7
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.0e-18 97.1 88 48.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.8e-18 94.7 231 29.9
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.3e-17 94.4 165 32.7
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 3.7e-17 92.8 160 31.2
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.4e-16 90.9 207 29.5
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.4e-16 90.1 117 40.2
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 3.5e-15 86.3 152 32.2
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 4.6e-15 85.9 155 32.3
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 5.9e-15 85.5 155 32.3
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.9e-15 85.5 115 41.7
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.3e-14 84.3 155 33.5
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.3e-14 83.6 156 32.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 3.0e-14 83.2 84 46.4
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.9e-14 82.8 173 27.2
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 6.6e-14 82.0 73 46.6
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.1e-13 81.3 116 40.5
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.5e-13 80.9 166 30.7
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 4.3e-13 79.3 160 29.4
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 5.6e-13 79.0 186 29.6
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.2e-12 77.8 150 30.7
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.2e-12 77.8 210 27.1
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 3.6e-12 76.3 62 56.5
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.0e-11 74.7 139 30.9
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.4e-11 74.3 143 30.8
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 2.3e-11 73.6 160 26.9
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 5.2e-11 72.4 160 31.9
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 6.8e-11 72.0 129 30.2
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.2e-10 71.2 192 28.6
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 4.4e-10 69.3 180 27.8
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 5.8e-10 68.9 150 28.7
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 9.8e-10 68.2 160 28.1
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 1.3e-09 67.8 160 28.8
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.2e-09 67.0 150 28.7
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.2e-09 67.0 128 31.2
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 3.7e-09 66.2 158 27.8
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.2e-08 63.2 85 31.8
Actinidia17847 Actinidia chinensis HOM05D000827 ORTHO05D008888 1.2e-07 61.2 48 58.3
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 7.8e-07 58.5 35 60.0
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.0e-06 58.2 125 28.0


User provided reference genes

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