Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0746 Tripterygium wilfordii HOM05D010097 ORTHO05D011665 1.1e-96 356.7 180 100.0
Potri.009G074900 Populus trichocarpa HOM05D010097 ORTHO05D011665 1.3e-22 110.5 146 48.6
Manes.18G136421 Manihot esculenta HOM05D010097 ORTHO05D011665 2.9e-22 109.4 94 59.6
Sabra09G0056800 Salix brachista HOM05D010097 ORTHO05D011665 1.1e-21 107.5 146 47.9
CiPaw.13G073400 Carya illinoinensis HOM05D010097 ORTHO05D011665 1.6e-20 103.6 101 57.4
Manes.18G137881 Manihot esculenta HOM05D010097 ORTHO05D011665 2.1e-20 103.2 126 47.6
Gohir.A08G202150 Gossypium hirsutum HOM05D010097 ORTHO05D011665 8.0e-20 101.3 153 41.8
QL01p039458 Quercus lobata HOM05D010097 ORTHO05D011665 1.0e-19 100.9 129 45.7
Haze_24378 Corylus avellana HOM05D010097 ORTHO05D011665 1.4e-19 100.5 127 48.0
Gorai.004G233100 Gossypium raimondii HOM05D010097 ORTHO05D011665 1.4e-19 100.5 156 40.4
Gohir.D08G219001 Gossypium hirsutum HOM05D010097 ORTHO05D011665 4.0e-19 99.0 156 39.7
Cfa011739 Carpinus fangiana HOM05D010097 ORTHO05D011665 5.2e-19 98.6 152 44.1
Sed0022779 Sechium edule HOM05D010097 ORTHO05D011665 5.2e-19 98.6 121 47.9
ClCG02G019420 Citrullus lanatus HOM05D010097 ORTHO05D011665 6.8e-19 98.2 121 48.8
MELO3C026833.2 Cucumis melo HOM05D000734 ORTHO05D011665 8.9e-19 97.8 95 55.8
Manes.02G212300 Manihot esculenta HOM05D010097 ORTHO05D011665 4.9e-17 92.0 98 50.0
COL.COLO4_11076 Corchorus olitorius HOM05D010097 ORTHO05D011665 8.3e-17 91.3 125 45.6
Gohir.A08G202300 Gossypium hirsutum HOM05D010097 ORTHO05D011665 5.4e-16 88.6 151 41.7
Gohir.D08G219100 Gossypium hirsutum HOM05D010097 ORTHO05D011665 1.3e-14 84.0 150 41.3
Gorai.004G233200 Gossypium raimondii HOM05D010097 ORTHO05D011665 1.3e-14 84.0 150 41.3
PGR102G2060 Punica granatum HOM05D010097 ORTHO05D011665 3.3e-13 79.3 98 43.9
FAN11G3028 Fragaria x ananassa HOM05D040535 ORTHO05D011665 3.6e-12 75.9 146 36.3
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 4.0e-11 72.4 146 35.6
FAN21G3509 Fragaria x ananassa HOM05D040535 ORTHO05D011665 4.0e-11 72.4 146 34.9
Thecc.09G353500 Theobroma cacao HOM05D010097 ORTHO05D011665 1.2e-10 70.9 149 36.2
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 3.7e-09 65.9 116 34.5
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 6.4e-09 65.1 140 30.7
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 1.1e-08 64.3 137 30.7
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 1.4e-08 63.9 91 35.2
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-08 63.9 91 35.2
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 1.4e-08 63.9 91 35.2
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 1.9e-08 63.5 133 30.8
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 1.9e-08 63.5 91 35.2
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 2.4e-08 63.2 123 30.9
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 2.4e-08 63.2 123 30.9
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 2.4e-08 63.2 123 30.9
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 3.2e-08 62.8 91 35.2
MBI15_g40755_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 4.1e-08 62.4 99 34.3
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 4.1e-08 62.4 114 32.5
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 7.0e-08 61.6 101 33.7
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 7.0e-08 61.6 110 30.9
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 7.0e-08 61.6 91 34.1
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 7.0e-08 61.6 137 33.6
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 1.2e-07 60.8 120 30.8
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 1.2e-07 60.8 98 34.7
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 1.2e-07 60.8 100 35.0
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.6e-07 60.5 142 26.1
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 1.6e-07 60.5 125 30.4
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 1.6e-07 60.5 129 31.0
THA.LOC104810700 Tarenaya hassleriana HOM05D010097 ORTHO05D011665 1.6e-07 60.5 99 35.4
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 2.0e-07 60.1 91 33.0
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.0e-07 60.1 137 33.6
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 2.0e-07 60.1 91 33.0
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 2.0e-07 60.1 91 33.0
Thecc.05G010100 Theobroma cacao HOM05D002172 ORTHO05D002167 2.0e-07 60.1 98 32.7
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.7e-07 59.7 91 31.9
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 3.5e-07 59.3 91 33.0
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 3.5e-07 59.3 114 29.8
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 3.5e-07 59.3 91 33.0
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 3.5e-07 59.3 91 33.0
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 4.6e-07 58.9 147 31.3
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 4.6e-07 58.9 118 27.1
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 6.0e-07 58.5 122 32.8
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 6.0e-07 58.5 173 27.7
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 6.0e-07 58.5 110 30.0
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 7.8e-07 58.2 91 29.7
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 7.8e-07 58.2 122 27.9
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 7.8e-07 58.2 91 31.9
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 7.8e-07 58.2 123 30.9
Pp3c7_23340 Physcomitrium patens HOM05D000516 ORTHO05D002167 1.0e-06 57.8 117 34.2
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.0e-06 57.8 136 27.2
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.0e-06 57.8 136 27.2
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 1.3e-06 57.4 130 26.9
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 1.3e-06 57.4 122 29.5
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 1.7e-06 57.0 98 32.7
CDE04G1435 Ceratophyllum demersum HOM05D065581 ORTHO05D002167 3.0e-06 56.2 117 31.6
QL07p034309 Quercus lobata HOM05D002172 ORTHO05D002167 3.9e-06 55.8 92 30.4
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 5.0e-06 55.5 91 30.8
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 5.0e-06 55.5 91 30.8
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 5.0e-06 55.5 91 29.7
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 6.6e-06 55.1 134 31.3
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 8.6e-06 54.7 91 29.7
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 8.6e-06 54.7 91 33.0


User provided reference genes

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