Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 7.8e-164 580.5 312 100.0
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.4e-149 532.3 312 92.3
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 6.5e-102 374.8 313 69.3
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.1e-101 374.0 313 70.3
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 4.4e-98 362.1 313 66.1
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.4e-91 340.5 312 62.8
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 6.8e-91 338.2 328 63.1
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 3.4e-90 335.9 311 64.6
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.3e-89 334.0 312 62.8
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 2.2e-89 333.2 327 62.4
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 2.8e-89 332.8 313 64.2
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 3.7e-89 332.4 320 61.2
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 8.3e-89 331.3 332 60.5
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.4e-88 329.7 311 64.0
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 3.1e-88 329.3 346 59.2
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 9.1e-88 327.8 315 63.8
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.7e-86 323.6 312 63.8
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.9e-85 320.1 329 61.1
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 7.2e-85 318.2 313 62.6
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 9.5e-85 317.8 314 62.7
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 2.1e-84 316.6 316 60.8
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 3.6e-84 315.8 318 59.7
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 4.7e-84 315.5 316 59.5
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 1.0e-83 314.3 319 58.9
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.8e-83 313.5 316 59.2
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 6.8e-83 311.6 318 57.2
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 6.8e-83 311.6 319 58.6
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.0e-82 310.1 313 62.0
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 4.4e-82 308.9 319 58.0
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.7e-82 308.5 325 57.2
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.7e-82 308.5 319 58.0
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.7e-82 308.5 319 58.0
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.3e-81 307.4 323 57.6
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 2.2e-81 306.6 311 59.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 2.2e-81 306.6 318 56.3
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.8e-81 306.2 318 58.5
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 3.7e-81 305.8 316 59.2
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 4.9e-81 305.4 311 60.1
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 1.4e-80 303.9 319 56.1
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.4e-80 303.1 357 54.1
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.1e-80 302.8 316 59.2
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 7.0e-80 301.6 319 56.4
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 9.2e-80 301.2 313 57.2
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.7e-78 297.0 312 59.0
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 2.9e-78 296.2 313 58.1
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.5e-77 293.9 313 57.5
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.5e-77 293.1 316 58.9
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 7.3e-77 291.6 335 53.7
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 4.7e-76 288.9 318 53.8
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 4.7e-76 288.9 321 56.7
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 8.0e-76 288.1 324 55.2
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 8.0e-76 288.1 313 58.8
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.8e-75 287.0 321 56.1
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 2.3e-75 286.6 311 54.7
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 2.3e-75 286.6 311 54.7
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 3.0e-75 286.2 311 56.9
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 3.0e-75 286.2 317 55.8
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 5.2e-75 285.4 321 55.8
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 8.9e-75 284.6 322 54.7
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.5e-74 283.9 330 54.2
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 2.6e-74 283.1 311 55.0
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 3.4e-74 282.7 236 67.8
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 4.4e-74 282.3 322 56.8
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.8e-74 281.2 323 54.8
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.8e-74 281.2 323 54.8
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.7e-73 280.4 316 53.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 2.2e-73 280.0 357 49.9
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 4.9e-73 278.9 324 54.3
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 8.3e-73 278.1 300 57.0
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.1e-72 277.7 310 54.2
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.4e-72 277.3 315 57.1
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-72 277.3 318 53.5
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 7.0e-72 275.0 312 54.2
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 4.6e-71 272.3 323 53.9
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 3.9e-70 269.2 316 53.5
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 8.6e-70 268.1 312 54.5
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.5e-69 267.3 347 50.7
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.9e-69 266.9 318 52.8
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 2.5e-69 266.5 313 53.0
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 7.3e-69 265.0 320 51.6
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.4e-67 260.8 319 53.0
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 6.8e-67 258.5 325 53.5
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.2e-66 257.7 211 67.3
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 9.8e-66 254.6 331 49.2
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 2.9e-65 253.1 287 55.1
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.9e-65 252.3 333 49.2
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-64 251.1 264 57.6
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.2e-64 249.6 264 58.0
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.1e-64 249.2 324 49.4
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 7.0e-64 248.4 312 51.6
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 6.6e-62 241.9 316 50.0
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 1.1e-61 241.1 319 48.9
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.5e-61 240.7 324 51.2
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 3.3e-61 239.6 312 48.4
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.2e-60 237.7 315 49.2
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 3.1e-59 233.0 315 48.9
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 4.0e-59 232.6 310 49.7
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 4.0e-59 232.6 312 48.7
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 4.0e-59 232.6 268 55.2
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 4.4e-58 229.2 311 48.2
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.3e-57 227.6 311 46.6
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.7e-57 226.1 308 48.4
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 6.4e-57 225.3 263 51.7
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 6.0e-55 218.8 209 61.7
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 6.0e-55 218.8 191 63.9
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 6.0e-55 218.8 191 63.9
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 7.8e-55 218.4 325 43.7
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 3.9e-54 216.1 243 54.3
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 5.1e-54 215.7 175 68.0
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 7.3e-53 211.8 341 44.0
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.6e-52 210.7 311 46.3
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.5e-50 204.1 191 61.3
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.5e-50 204.1 243 55.1
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 3.4e-50 203.0 311 45.3
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 8.4e-49 198.4 309 43.4
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 8.4e-49 198.4 309 43.4
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.0e-46 191.4 211 52.6
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.1e-44 183.7 227 49.8
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.0e-42 177.2 275 48.4
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 9.9e-42 174.9 313 42.8
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 9.9e-42 174.9 321 40.5
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 8.4e-41 171.8 234 45.3
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 2.4e-40 170.2 238 45.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.4e-40 169.1 193 56.5
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 9.3e-40 168.3 238 46.6
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.6e-39 167.5 272 44.9
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.0e-38 164.9 171 57.3
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.7e-38 164.1 234 46.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.0e-35 152.9 102 78.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 5.8e-34 149.1 232 45.7
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 9.9e-34 148.3 109 70.6
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.9e-33 146.7 313 38.0
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 4.9e-33 146.0 196 43.9
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 3.2e-32 143.3 220 42.7
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 9.3e-32 141.7 215 46.5
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.7e-31 140.2 111 66.7
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 7.9e-31 138.7 216 45.4
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.3e-30 137.9 207 44.4
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.3e-30 137.1 223 45.7
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 5.8e-26 122.5 101 66.3
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.7e-23 113.6 99 62.6
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 6.0e-23 112.5 149 51.7
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 5.6e-21 105.9 82 69.5
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 1.5e-18 97.8 315 34.3
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.9e-16 90.9 82 56.1
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.1e-15 87.4 71 69.0
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 7.9e-15 85.5 57 75.4
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 3.3e-13 80.1 96 50.0
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 1.1e-08 65.1 159 32.7
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 1.9e-08 64.3 48 70.8
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.7e-07 60.5 139 35.3
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 2.3e-06 57.4 146 36.3


User provided reference genes

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