Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 0.0e+00 1668.3 938 100.0
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 0.0e+00 1157.9 942 69.4
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1153.3 945 71.0
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1152.1 946 70.6
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 0.0e+00 1151.7 946 71.5
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 0.0e+00 1147.9 950 70.2
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 0.0e+00 1131.7 948 67.2
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 0.0e+00 1109.7 942 68.7
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 0.0e+00 1106.7 948 69.3
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 0.0e+00 1102.4 943 68.6
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 0.0e+00 1083.6 935 69.0
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 0.0e+00 1077.8 927 64.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 0.0e+00 1075.5 943 67.8
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.6e-308 1062.8 956 64.3
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.6e-308 1062.8 955 66.9
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.3e-306 1055.0 998 63.8
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.1e-301 1040.0 935 65.3
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 2.4e-301 1038.9 949 66.1
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.7e-294 1016.1 955 64.1
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.2e-294 1015.8 919 63.0
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 7.8e-292 1007.3 859 66.5
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.5e-290 1003.0 939 62.4
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.4e-288 996.5 965 62.7
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.5e-287 993.0 951 61.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.0e-287 992.6 930 61.6
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 2.9e-286 988.8 956 61.1
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 1.4e-285 986.5 944 62.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 3.0e-283 978.8 990 59.5
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 8.6e-283 977.2 949 62.1
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 1.4e-280 969.9 956 60.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.8e-278 961.8 1067 55.1
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 1.2e-276 956.8 950 59.4
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.3e-275 953.4 925 59.8
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.1e-274 950.3 962 59.6
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.6e-273 946.4 985 58.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 8.1e-273 944.1 956 59.6
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.3e-270 936.8 923 61.1
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.9e-270 935.6 936 60.7
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 3.8e-270 935.3 969 59.3
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 6.4e-270 934.5 941 59.2
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-269 933.7 939 58.7
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.4e-269 933.3 956 60.5
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 7.1e-269 931.0 931 60.7
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 7.1e-269 931.0 926 59.9
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 2.7e-268 929.1 931 60.6
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.6e-267 924.5 985 58.6
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.6e-267 924.5 950 60.0
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 8.1e-265 917.5 940 58.8
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.4e-264 916.0 947 58.0
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 4.0e-264 915.2 898 62.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.2e-263 913.7 932 60.9
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 2.6e-263 912.5 956 57.1
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.4e-263 912.1 937 57.8
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 7.6e-263 911.0 951 58.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 7.6e-263 911.0 956 59.5
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 3.8e-262 908.7 942 56.6
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 2.4e-261 906.0 944 56.8
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.2e-261 905.2 962 57.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 1.0e-259 900.6 937 58.5
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.0e-259 900.6 942 58.9
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 3.9e-259 898.7 938 60.1
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.5e-258 896.0 931 58.9
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 3.3e-258 895.6 946 59.4
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.8e-257 891.7 944 56.8
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 4.8e-257 891.7 985 57.5
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.1e-257 891.0 938 57.0
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.2e-255 887.1 943 55.8
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.5e-255 886.7 944 56.1
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.0e-255 886.3 962 57.8
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.9e-254 882.5 970 56.6
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 8.4e-254 880.9 930 57.3
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.1e-253 880.6 949 57.4
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-252 877.1 853 60.8
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 2.7e-252 875.9 943 56.4
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 4.3e-250 868.6 994 53.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.4e-248 863.6 990 55.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 5.3e-248 861.7 947 55.2
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 9.0e-248 860.9 950 56.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 9.0e-248 860.9 946 55.5
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 3.4e-247 859.0 1027 55.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 4.5e-247 858.6 950 56.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 3.8e-246 855.5 950 55.4
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 8.4e-246 854.4 949 54.6
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.6e-244 850.1 935 52.9
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.9e-244 847.8 965 56.6
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 5.1e-243 845.1 943 53.3
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 4.3e-242 842.0 958 55.8
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 2.4e-240 836.3 947 56.1
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 5.5e-237 825.1 965 54.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.3e-225 787.3 878 53.8
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 7.7e-223 778.1 936 51.6
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.9e-222 776.2 958 51.6
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 9.4e-213 744.6 834 55.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 5.0e-206 722.2 940 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.3e-187 660.2 966 46.0
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.5e-178 630.9 954 45.1
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.6e-175 620.9 978 44.1
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 9.9e-170 601.7 447 65.3
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.2e-164 582.4 691 55.3
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.2e-163 579.3 635 63.9
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.7e-151 540.4 394 68.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 3.3e-149 533.5 578 59.0
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 1.5e-130 471.5 522 60.3
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.7e-125 453.0 611 47.5
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 5.0e-121 439.9 899 41.5
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.5e-106 390.2 502 52.2
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 4.2e-96 357.1 610 44.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.6e-95 354.0 265 70.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.6e-87 327.4 332 61.4
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 8.8e-86 322.8 316 60.4
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.3e-81 308.9 317 58.7
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.6e-71 275.4 261 56.7
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.7e-68 264.2 404 48.5
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.1e-67 260.8 265 54.0
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.6e-66 257.3 336 55.7
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 1.8e-62 245.4 963 29.0
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.1e-59 236.1 243 58.4
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.1e-55 221.9 192 58.9
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.1e-54 219.5 394 42.9
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 2.1e-50 205.3 1164 27.8
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.0e-33 149.8 325 46.5
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 7.3e-32 143.7 797 26.0
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 6.2e-31 140.6 339 40.7
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.4e-30 139.4 100 67.0
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.0e-30 137.9 83 79.5
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.6e-29 135.2 97 70.1
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.5e-29 134.4 123 56.1
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.6e-29 133.7 111 62.2
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 7.6e-29 133.7 694 24.4
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-28 132.5 150 51.3
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.4e-27 129.4 115 59.1
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.3e-25 122.9 111 58.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.1e-22 113.2 257 37.7
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.6e-21 108.6 88 64.8
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.6e-21 107.1 116 55.2
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.3e-20 106.3 88 64.8
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.8e-17 95.9 69 75.4
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.3e-15 89.7 73 68.5
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.8e-15 88.6 97 52.6
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.8e-14 85.9 57 73.7
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.0e-14 84.7 85 58.8
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-14 84.3 52 75.0
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.6e-13 82.0 52 75.0
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 3.4e-13 81.6 152 37.5
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 2.9e-12 78.6 205 31.2
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 4.9e-12 77.8 58 70.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-11 75.5 54 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.8e-06 59.3 89 46.1
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 5.3e-06 57.8 63 46.0
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.0e-06 57.0 48 66.7


User provided reference genes

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