Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 5.9e-81 304.3 169 100.0
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 9.4e-79 297.0 169 96.4
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 1.6e-62 243.0 174 75.3
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 3.0e-61 238.8 174 74.1
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 5.2e-61 238.0 172 76.2
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 5.2e-61 238.0 165 74.5
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 2.0e-60 236.1 171 80.1
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 7.4e-60 234.2 172 79.7
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 9.7e-60 233.8 172 70.3
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.3e-59 233.4 169 80.5
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.3e-59 233.4 169 71.0
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 3.7e-59 231.9 166 72.9
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 8.2e-59 230.7 168 78.6
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 1.1e-58 230.3 169 67.5
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.1e-58 230.3 171 78.9
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.4e-58 229.9 158 75.9
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 3.1e-58 228.8 171 67.3
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 4.1e-58 228.4 172 77.3
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 7.0e-58 227.6 171 67.8
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 7.0e-58 227.6 171 67.3
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 7.0e-58 227.6 171 67.8
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 7.0e-58 227.6 171 67.8
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.2e-57 226.9 153 81.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 1.2e-57 226.9 168 76.8
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.6e-57 226.5 168 66.1
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 2.0e-57 226.1 168 70.2
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 3.5e-57 225.3 165 67.3
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.5e-57 225.3 161 69.6
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.5e-57 225.3 161 69.6
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 4.5e-57 224.9 169 68.6
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 4.5e-57 224.9 169 68.6
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 4.5e-57 224.9 178 75.8
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 4.5e-57 224.9 153 81.0
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 5.9e-57 224.6 166 75.3
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 7.7e-57 224.2 160 77.5
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 7.7e-57 224.2 169 67.5
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 7.7e-57 224.2 169 78.1
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 1.3e-56 223.4 168 66.1
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.3e-56 223.4 166 66.9
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 1.3e-56 223.4 172 75.6
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.7e-56 223.0 165 70.3
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.7e-56 223.0 144 86.1
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.7e-56 223.0 166 74.7
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.7e-56 223.0 172 66.9
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 2.9e-56 222.2 156 76.3
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 3.8e-56 221.9 167 77.2
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 6.5e-56 221.1 161 67.7
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.5e-56 221.1 169 66.3
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 8.5e-56 220.7 170 65.3
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 8.5e-56 220.7 170 65.3
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 8.5e-56 220.7 148 81.8
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 8.5e-56 220.7 166 74.7
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.1e-55 220.3 169 66.3
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.1e-55 220.3 169 66.3
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.1e-55 220.3 169 66.3
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 1.1e-55 220.3 172 75.0
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.5e-55 219.9 175 72.0
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.5e-55 219.9 166 75.9
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 2.5e-55 219.2 172 73.3
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 3.2e-55 218.8 168 66.7
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 4.2e-55 218.4 157 69.4
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 4.2e-55 218.4 157 69.4
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 5.5e-55 218.0 168 66.1
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 5.5e-55 218.0 168 66.1
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.5e-55 218.0 168 74.4
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.5e-55 218.0 168 74.4
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 5.5e-55 218.0 157 77.1
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 7.2e-55 217.6 166 65.1
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-54 216.9 168 65.5
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.2e-54 216.9 168 65.5
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 1.2e-54 216.9 172 73.3
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 3.6e-54 215.3 175 65.1
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 3.6e-54 215.3 159 68.6
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 4.7e-54 214.9 169 64.5
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 4.7e-54 214.9 177 66.7
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.7e-54 214.9 157 69.4
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 4.7e-54 214.9 157 69.4
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 4.7e-54 214.9 168 73.2
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 4.7e-54 214.9 152 69.1
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 8.0e-54 214.2 171 63.7
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 8.0e-54 214.2 166 72.3
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 8.0e-54 214.2 166 72.3
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.0e-53 213.8 170 68.2
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 3.0e-53 212.2 166 71.7
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 5.2e-53 211.5 169 64.5
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 5.2e-53 211.5 178 71.3
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 8.8e-53 210.7 161 68.9
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 8.8e-53 210.7 155 69.0
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 1.2e-52 210.3 172 60.5
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.0e-52 209.5 144 71.5
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 2.6e-52 209.1 159 70.4
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 7.5e-52 207.6 168 67.3
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.3e-51 206.8 172 62.8
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 1.7e-51 206.5 179 59.2
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 1.7e-51 206.5 163 65.0
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 3.7e-51 205.3 161 64.6
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 3.7e-51 205.3 172 61.0
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 8.3e-51 204.1 167 62.3
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 2.4e-50 202.6 169 59.2
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 5.9e-49 198.0 165 58.8
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 6.5e-48 194.5 152 76.3
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 5.5e-47 191.4 172 59.3
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 4.7e-46 188.3 146 77.4
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.2e-44 183.7 143 78.3
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 3.4e-44 182.2 139 71.2
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 2.8e-43 179.1 160 56.9
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 3.7e-43 178.7 145 64.1
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 6.3e-43 177.9 138 66.7
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 6.3e-43 177.9 105 81.9
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 1.1e-42 177.2 163 64.4
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 5.4e-42 174.9 144 74.3
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 5.4e-42 174.9 144 72.9
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 5.4e-42 174.9 161 57.1
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.2e-41 173.7 128 78.9
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 5.9e-41 171.4 125 74.4
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 5.0e-40 168.3 102 80.4
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 6.6e-40 167.9 143 59.4
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.9e-39 166.4 165 64.8
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 2.5e-39 166.0 99 75.8
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-39 164.1 133 70.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-39 164.1 133 70.7
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 9.5e-39 164.1 126 76.2
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 8.0e-38 161.0 139 69.8
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 1.2e-36 157.1 141 59.6
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.2e-36 157.1 150 68.0
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.2e-36 157.1 150 68.0
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 5.9e-33 144.8 98 68.4
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 7.8e-33 144.4 81 82.7
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 3.9e-32 142.1 98 66.3
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 8.6e-32 141.0 133 56.4
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 4.7e-30 135.2 165 45.5
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 4.0e-29 132.1 122 58.2
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 5.2e-29 131.7 148 62.8
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.2e-25 120.6 76 76.3
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 2.7e-25 119.4 97 67.0
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 6.0e-25 118.2 153 44.4
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 1.3e-24 117.1 64 89.1
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.9e-23 113.2 115 67.0
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 5.2e-21 105.1 160 36.9
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 8.3e-19 97.8 143 35.7
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 5.4e-18 95.1 86 48.8
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.6e-14 83.6 77 58.4
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 8.3e-11 71.2 71 73.2
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 8.3e-11 71.2 83 49.4
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 2.3e-08 63.2 88 42.0
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.0e-08 62.8 55 60.0
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.5e-07 60.5 68 48.5
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 2.5e-07 59.7 68 47.1
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 3.3e-07 59.3 31 90.3
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 4.3e-07 58.9 66 45.5
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 5.6e-07 58.5 66 47.0
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 7.3e-07 58.2 84 41.7
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 9.5e-07 57.8 27 92.6
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 1.2e-06 57.4 65 44.6
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 1.6e-06 57.0 29 86.2
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 2.1e-06 56.6 50 56.0
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 2.8e-06 56.2 66 45.5
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 4.7e-06 55.5 29 82.8
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 4.7e-06 55.5 38 63.2
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 4.7e-06 55.5 65 44.6


User provided reference genes

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