Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-150 536.6 303 100.0
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.7e-99 366.7 266 85.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 6.5e-99 364.8 277 70.8
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.1e-93 345.9 286 64.3
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.2e-92 344.0 282 65.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.5e-92 342.4 286 64.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 7.8e-92 341.3 276 68.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.9e-90 336.7 280 63.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.0e-89 331.3 272 67.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.0e-88 330.9 281 64.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.0e-88 330.9 272 67.6
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 6.8e-88 328.2 271 64.9
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.8e-88 328.2 275 66.2
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.2e-87 327.4 272 66.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.2e-87 327.4 272 66.2
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-87 327.4 279 64.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.7e-87 325.1 272 66.9
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.7e-87 325.1 281 64.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.8e-87 324.3 272 66.2
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.8e-85 320.1 292 61.6
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.8e-85 320.1 292 62.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.7e-84 316.2 278 63.7
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.5e-84 315.8 280 62.1
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.6e-84 315.5 301 60.1
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-83 313.9 262 64.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.7e-83 313.5 280 61.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 5.0e-83 312.0 286 61.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 5.0e-83 312.0 286 61.2
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.5e-82 309.7 282 61.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 7.3e-82 308.1 276 62.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.8e-81 306.2 294 61.2
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 8.0e-81 304.7 280 61.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.0e-80 302.4 300 58.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 6.8e-80 301.6 281 59.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.4e-79 299.3 280 58.6
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 7.5e-79 298.1 279 60.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.7e-78 297.0 283 59.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.9e-77 293.5 282 60.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 7.0e-77 291.6 282 58.5
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.2e-76 290.8 281 58.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.7e-76 289.7 279 58.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 3.5e-76 289.3 282 60.6
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.2e-73 280.8 290 57.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.1e-73 280.0 281 56.2
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.4e-72 277.3 287 57.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.6e-71 273.1 274 56.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 6.4e-70 268.5 280 57.5
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 8.3e-70 268.1 276 56.9
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.1e-68 263.5 284 55.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.6e-68 262.3 297 52.5
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 7.8e-68 261.5 283 55.8
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.3e-67 260.8 277 55.2
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.0e-67 259.6 282 55.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.9e-67 259.2 273 56.4
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.1e-67 258.8 291 55.0
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-66 257.7 283 54.4
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.9e-66 256.9 283 54.8
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-66 256.9 277 55.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.9e-66 256.9 280 55.4
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.5e-66 256.5 286 53.5
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.5e-66 256.5 281 55.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.3e-66 255.8 286 53.8
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 5.6e-66 255.4 279 53.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-65 253.8 286 54.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 8.1e-65 251.5 285 53.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 8.1e-65 251.5 283 51.9
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 8.9e-64 248.1 287 53.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.6e-63 246.5 287 50.9
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 3.4e-63 246.1 281 52.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.3e-62 244.2 322 54.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.2e-62 243.4 288 52.4
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.9e-62 242.3 288 51.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.4e-62 241.9 280 53.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.4e-62 241.9 280 53.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 6.4e-62 241.9 290 52.1
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 8.4e-62 241.5 276 53.6
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.9e-61 240.4 253 57.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.4e-61 238.8 280 52.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.6e-60 235.7 322 49.4
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.6e-60 235.7 322 49.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.3e-59 234.2 281 50.5
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.3e-59 233.4 281 50.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.3e-59 233.4 282 51.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.0e-59 233.0 297 48.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.1e-59 232.3 267 50.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 8.7e-59 231.5 316 48.7
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.5e-58 229.9 288 49.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 4.3e-58 229.2 297 47.8
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 5.6e-58 228.8 298 49.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 9.6e-58 228.0 325 53.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.6e-57 227.3 292 51.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.6e-57 227.3 286 50.7
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 3.6e-57 226.1 273 53.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.7e-57 225.7 279 50.5
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.2e-57 225.3 289 48.4
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.1e-56 224.6 282 53.2
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.8e-56 223.8 278 48.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.8e-56 223.8 274 51.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.4e-56 223.4 271 49.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.1e-56 223.0 232 56.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.2e-56 222.2 292 50.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.2e-56 222.2 285 49.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.9e-56 221.9 274 50.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.4e-55 219.5 278 48.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 4.4e-55 219.2 276 50.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.9e-54 216.5 284 48.9
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.1e-53 214.5 256 53.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.1e-53 214.5 303 46.9
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 9.3e-53 211.5 241 53.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 3.5e-52 209.5 286 47.6
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.5e-52 209.5 305 45.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.6e-52 209.1 285 46.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.3e-51 207.6 284 47.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.7e-51 207.2 284 48.6
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.9e-51 206.1 266 49.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.5e-50 204.1 286 45.1
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.9e-50 203.8 326 41.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 7.3e-50 201.8 298 44.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.6e-49 200.7 257 48.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.6e-47 193.4 289 46.0
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 9.9e-47 191.4 278 46.8
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.2e-46 190.3 176 58.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-45 187.6 287 44.6
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 5.4e-45 185.7 304 42.4
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.2e-44 184.5 240 45.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.6e-44 184.1 279 45.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 7.9e-44 181.8 218 48.2
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.3e-43 180.3 274 42.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.9e-43 179.5 200 50.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.7e-43 178.3 220 49.1
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.9e-42 177.2 162 62.3
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.3e-42 176.4 282 44.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.8e-41 173.3 159 57.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 8.1e-41 171.8 276 43.8
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.3e-40 169.1 133 62.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.9e-39 164.9 271 42.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.4e-37 161.0 185 49.7
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.5e-37 159.1 275 44.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.8e-33 146.0 160 50.6
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.2e-33 145.6 269 38.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.4e-32 144.4 288 38.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-30 137.1 116 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-30 137.1 116 56.9
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.9e-30 136.7 222 45.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.5e-30 135.6 145 52.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 8.4e-30 135.2 266 38.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.9e-29 134.0 115 58.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-28 131.3 115 56.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.0e-28 129.0 163 47.2
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.0e-28 129.0 261 37.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 8.7e-27 125.2 77 75.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 6.3e-25 119.0 208 37.5
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 6.3e-25 119.0 123 61.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.1e-24 116.3 170 44.1
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.9e-13 80.9 154 43.5
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-10 70.5 139 44.6
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 5.7e-10 69.3 149 39.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.2e-09 67.4 53 60.4
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.4e-08 64.7 54 70.4
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.8e-08 64.3 48 56.2
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.2e-06 57.4 85 48.2
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.9e-06 57.0 84 47.6
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 5.0e-06 56.2 99 40.4


User provided reference genes

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