Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 0.0e+00 1086.2 530 100.0
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 1.5e-223 779.6 543 69.1
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 3.3e-223 778.5 533 69.4
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 1.3e-222 776.5 533 70.2
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 1.0e-219 766.9 536 69.8
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 7.2e-218 760.8 514 70.0
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 9.4e-218 760.4 539 69.2
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 2.1e-217 759.2 529 68.2
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 6.1e-217 757.7 565 66.7
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.4e-216 756.5 538 68.4
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 5.1e-216 754.6 541 67.5
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 1.7e-214 749.6 536 67.0
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 2.6e-212 742.3 535 68.8
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.6e-212 742.3 542 66.6
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 4.5e-212 741.5 503 68.2
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 4.5e-212 741.5 545 66.6
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 5.0e-211 738.0 483 71.2
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 8.5e-211 737.3 589 63.5
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 2.1e-209 732.6 483 71.0
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 1.5e-207 726.5 513 65.3
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 2.0e-207 726.1 503 66.0
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 2.6e-207 725.7 529 64.1
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 3.7e-206 721.8 512 67.2
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 6.3e-206 721.1 487 70.4
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 1.9e-202 709.5 529 64.8
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 1.4e-200 703.4 519 65.3
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 4.0e-200 701.8 537 62.0
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 1.5e-199 699.9 483 70.0
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.6e-199 699.1 639 56.8
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 3.7e-198 695.3 543 62.6
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 3.1e-197 692.2 537 62.6
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 8.5e-195 684.1 531 63.5
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 1.6e-193 679.9 478 67.2
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 4.7e-193 678.3 512 63.7
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 6.1e-193 677.9 513 63.5
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.8e-192 676.4 453 70.2
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 8.8e-192 674.1 494 65.8
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 1.2e-191 673.7 536 61.0
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.2e-191 673.7 593 58.3
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 4.4e-191 671.8 492 65.4
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 2.7e-188 662.5 436 72.5
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 1.7e-187 659.8 503 61.8
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.7e-185 652.5 560 61.1
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 1.5e-183 646.7 445 70.6
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 2.8e-182 642.5 514 59.7
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 4.9e-182 641.7 529 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 4.1e-181 638.6 531 55.7
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 3.8e-179 632.1 507 57.2
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 8.6e-179 630.9 492 62.8
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 1.9e-178 629.8 537 61.3
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 1.2e-177 627.1 483 59.4
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 7.5e-175 617.8 513 57.7
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 2.3e-171 606.3 409 69.2
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.6e-167 592.8 540 52.6
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 7.5e-159 564.7 432 64.4
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 9.8e-159 564.3 543 51.9
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 1.6e-153 547.0 536 53.0
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 3.4e-151 539.3 505 51.3
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 6.4e-134 481.9 430 58.4
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 4.3e-122 442.6 492 45.5
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 5.3e-120 435.6 459 48.8
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 5.8e-119 432.2 323 66.9
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.1e-104 384.8 498 42.4
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 2.1e-92 344.0 509 39.9
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.8e-91 340.9 302 52.6
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 9.7e-90 335.1 306 55.9
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 9.4e-85 318.5 538 40.1
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 2.3e-83 313.9 274 59.9
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 5.9e-79 299.3 212 65.6
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 1.0e-78 298.5 241 61.0
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 5.0e-78 296.2 485 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.6e-76 291.2 361 42.7
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 5.2e-75 286.2 189 70.9
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 2.2e-73 280.8 516 35.5
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 1.0e-59 235.3 513 33.9
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.4e-48 197.6 197 47.7
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 2.3e-46 191.0 126 70.6
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 3.4e-42 177.2 278 33.5
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 7.8e-39 166.0 188 45.7
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 7.3e-29 132.9 91 68.1
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 7.3e-29 132.9 79 74.7
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 8.4e-25 119.4 74 74.3
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 8.7e-22 109.4 90 56.7
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.5e-21 107.8 169 35.5
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 2.1e-20 104.8 480 22.3
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 4.0e-19 100.5 80 62.5
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 6.4e-17 93.2 462 22.3
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 9.3e-16 89.4 440 22.3
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.6e-15 88.6 467 21.8
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 3.5e-15 87.4 471 22.1
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 6.0e-15 86.7 90 44.4
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 1.3e-14 85.5 491 20.8
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 1.3e-14 85.5 460 21.1
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 1.8e-14 85.1 461 22.3
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 1.8e-14 85.1 471 21.2
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 2.3e-14 84.7 69 59.4
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 3.9e-14 84.0 467 21.0
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 6.7e-14 83.2 460 21.3
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 6.7e-14 83.2 467 20.8
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 8.7e-14 82.8 467 21.0
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 1.1e-13 82.4 460 21.3
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 1.1e-13 82.4 464 20.7
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.1e-13 82.4 461 20.6
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 1.5e-13 82.0 462 21.6
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 1.5e-13 82.0 460 20.9
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 1.5e-13 82.0 467 21.2
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 1.5e-13 82.0 461 20.8
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 1.5e-13 82.0 466 21.7
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 1.9e-13 81.6 474 21.1
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 2.5e-13 81.3 460 20.9
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 3.3e-13 80.9 467 21.2
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 3.3e-13 80.9 460 20.9
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 3.3e-13 80.9 464 20.7
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 4.3e-13 80.5 464 20.5
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 4.3e-13 80.5 484 21.1
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 4.3e-13 80.5 480 21.5
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 5.6e-13 80.1 490 20.8
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 7.4e-13 79.7 511 21.5
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 9.6e-13 79.3 467 21.0
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 1.6e-12 78.6 467 20.1
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 2.1e-12 78.2 460 21.1
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 2.1e-12 78.2 460 21.1
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 2.8e-12 77.8 467 21.0
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 2.8e-12 77.8 467 20.8
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 2.8e-12 77.8 467 21.0
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 3.7e-12 77.4 460 20.4
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 3.7e-12 77.4 467 20.6
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 3.7e-12 77.4 467 20.8
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 3.7e-12 77.4 460 20.4
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 4.8e-12 77.0 460 20.7
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 4.8e-12 77.0 468 20.7
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 4.8e-12 77.0 468 20.7
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 6.2e-12 76.6 460 20.4
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 6.2e-12 76.6 460 20.4
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.2e-12 76.6 468 20.7
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 6.2e-12 76.6 468 20.7
Sed0014208 Sechium edule HOM05D002360 ORTHO05D006971 6.2e-12 76.6 494 20.2
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 8.1e-12 76.3 461 20.6
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 1.4e-11 75.5 460 20.2
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.4e-11 75.5 465 21.5
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 1.8e-11 75.1 469 20.9
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 3.1e-11 74.3 460 20.2
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 4.0e-11 73.9 460 20.2
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 5.3e-11 73.6 460 20.2
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 6.9e-11 73.2 460 20.0
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 6.9e-11 73.2 460 20.2
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 6.9e-11 73.2 408 22.1
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 2.0e-10 71.6 460 19.8
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 2.0e-10 71.6 464 20.9
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 2.6e-10 71.2 460 19.8
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 7.6e-10 69.7 492 19.7
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 1.7e-09 68.6 457 20.6
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.7e-09 68.6 124 44.4
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 3.8e-09 67.4 483 19.5
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 1.4e-08 65.5 491 20.2
CBR_g29276 Chara braunii HOM05D002360 ORTHO05D000002 1.9e-08 65.1 401 22.7
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 3.2e-08 64.3 434 20.5
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 3.5e-07 60.8 281 22.1
Cfa008674 Carpinus fangiana HOM05D002360 ORTHO05D006971 1.8e-06 58.5 294 22.8


User provided reference genes

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