Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 2037.3 1006 100.0
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1479.5 1054 69.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1471.1 1054 69.8
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1469.1 1043 69.5
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1468.8 1050 69.6
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1459.1 1050 69.0
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1458.7 1066 69.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1443.3 1053 67.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1436.4 1044 69.0
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1432.9 1029 68.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1427.5 1048 68.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1426.4 1043 66.3
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1421.0 1050 67.2
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1412.1 1045 65.8
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1410.6 1047 66.1
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1408.7 1023 68.4
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1401.3 1082 66.5
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1051 65.5
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1399.8 1053 65.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1397.5 1045 67.2
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1394.4 1054 65.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1390.9 1058 65.6
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1062 66.3
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1380.9 1050 64.8
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1379.4 1046 65.8
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1378.6 1046 65.2
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1376.3 1046 65.7
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1375.1 1055 64.5
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1373.2 1041 65.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1373.2 1043 64.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1366.7 1052 64.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1049 64.7
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1365.1 1045 65.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1363.2 1053 65.1
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1358.6 1056 64.2
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1357.8 1058 64.0
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1353.2 1043 64.6
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1352.0 1019 65.2
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1348.2 1060 64.1
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1344.3 1172 59.9
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1343.2 1059 63.7
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1340.9 1047 64.1
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1338.2 1048 62.9
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1073 61.9
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1334.7 1067 63.6
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1334.3 1047 63.8
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1321.2 1043 62.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1321.2 1053 62.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1320.4 1052 62.4
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1317.8 1044 63.1
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1303.1 1074 62.8
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1070 61.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1300.0 1047 62.1
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1294.3 1063 61.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1293.9 1046 62.1
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1291.6 1052 61.4
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1289.6 1063 61.1
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1015 63.1
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1045 61.8
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1282.7 1048 61.4
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1280.8 1045 61.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1279.2 1045 61.8
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1278.5 1045 61.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1275.8 1062 60.2
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1273.8 1052 60.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1093 58.9
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1273.1 1083 59.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1268.8 1049 59.9
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1268.4 1051 59.6
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1266.1 1108 58.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1264.6 1058 58.9
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1258.0 1132 57.2
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1245.7 1048 60.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1239.2 1085 57.8
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1233.0 1045 59.0
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1227.6 1050 58.3
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1028 58.9
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1042 60.6
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1200.7 1053 58.0
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1199.5 1053 57.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1044 58.1
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1172.5 1180 54.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1157.9 1064 56.5
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1155.6 1039 56.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1141.3 847 65.6
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1137.1 1052 56.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1111.3 1139 52.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1107.0 1046 53.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1077.8 1061 52.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.0e-306 1055.8 1029 53.5
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 9.2e-291 1003.8 1052 51.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 3.6e-287 991.9 867 58.2
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.3e-264 915.6 1019 47.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-261 906.0 990 50.9
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.6e-255 886.7 912 53.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-248 863.2 678 62.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.7e-236 823.5 1065 43.9
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 5.2e-217 758.8 1068 40.3
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-211 741.1 508 71.9
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.8e-202 709.9 735 50.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 4.1e-198 696.0 706 51.3
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 5.6e-195 685.6 503 66.0
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.3e-188 664.5 493 66.9
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-186 656.4 717 50.5
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.3e-185 653.7 445 72.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.4e-182 642.5 705 47.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.9e-174 617.5 818 43.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 4.6e-173 612.8 1036 35.9
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.3e-172 610.5 663 49.2
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-166 591.7 504 58.3
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.1e-166 591.7 835 40.2
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.0e-164 585.1 548 56.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.3e-164 583.9 1046 36.6
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 9.6e-163 578.6 381 72.4
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.6e-155 552.7 858 37.1
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.5e-134 484.2 441 59.0
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.5e-126 457.6 351 62.7
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 7.4e-123 446.0 341 64.2
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.0e-120 438.0 453 49.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.7e-109 401.0 356 59.3
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.7e-109 401.0 854 32.2
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.6e-85 320.9 258 60.5
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.4e-83 314.3 1104 27.3
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-79 301.2 343 51.3
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 4.7e-77 293.9 220 67.7
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 2.6e-75 288.1 287 53.7
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.0e-71 274.6 177 75.7
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 4.7e-69 267.3 219 56.6
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.7e-66 257.7 244 58.2
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.1e-65 254.2 206 59.2
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 7.1e-65 253.4 280 51.1
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 3.5e-64 251.1 467 38.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.5e-62 245.7 903 27.6
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.0e-52 211.1 333 39.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 5.2e-52 210.7 158 60.1
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 7.1e-49 200.3 1023 24.0
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 7.8e-48 196.8 223 50.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.0e-47 194.9 125 75.2
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 5.8e-35 154.1 328 31.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.9e-34 151.8 191 46.6
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.7e-32 145.2 100 69.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 9.6e-30 136.7 113 65.5
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.1e-29 135.6 102 59.8
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 6.2e-29 134.0 87 75.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.2e-27 129.8 157 48.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.5e-27 129.4 102 63.7
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.5e-27 129.4 154 48.7
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 7.1e-25 120.6 71 73.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.0e-23 115.2 164 37.8
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 3.3e-22 111.7 85 55.3
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 7.6e-19 100.5 70 65.7
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.7e-16 92.0 70 60.0
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 5.1e-15 87.8 122 41.8
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-14 86.3 105 44.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.3e-10 73.2 100 45.0
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 6.1e-08 64.3 81 45.7
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 3.9e-07 61.6 75 49.3


User provided reference genes

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