Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.4e-137 490.7 245 100.0
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.7e-121 439.5 245 87.3
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.8e-91 339.7 247 71.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 5.0e-89 331.6 247 68.8
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.7e-87 325.9 247 68.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.0e-86 323.9 211 74.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 5.3e-83 311.6 246 66.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.1e-80 303.9 237 66.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.5e-80 301.6 211 72.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.0e-78 295.8 241 64.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.9e-78 295.4 239 64.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.7e-78 294.7 243 62.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.0e-77 293.1 249 62.7
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.3e-76 290.4 244 63.5
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.7e-76 290.0 208 70.2
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 8.2e-76 287.7 244 59.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 8.2e-76 287.7 244 59.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.4e-75 287.0 208 68.8
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.8e-75 286.6 202 70.3
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 9.1e-75 284.3 242 60.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.0e-74 283.1 245 61.2
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.5e-74 282.3 244 61.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.5e-74 282.3 242 62.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-73 280.8 245 59.6
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.7e-73 280.0 245 60.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.2e-73 279.6 241 59.3
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.9e-73 279.3 194 71.1
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 5.0e-73 278.5 243 60.5
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.0e-73 278.5 245 60.4
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.9e-72 276.6 248 59.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.9e-72 276.6 248 58.5
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.9e-72 276.6 244 60.2
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.2e-72 275.8 251 58.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.2e-72 275.4 248 58.1
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.2e-72 275.4 248 59.7
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.2e-72 274.6 249 59.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 7.2e-72 274.6 205 70.2
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 9.4e-72 274.2 240 60.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 9.4e-72 274.2 241 58.5
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.2e-71 273.9 242 59.5
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-71 273.9 237 57.8
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-71 273.9 243 58.4
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-71 272.3 242 59.5
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 3.6e-71 272.3 241 61.4
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.1e-71 271.6 244 60.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.1e-71 271.6 236 60.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 6.1e-71 271.6 248 56.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.0e-71 271.2 255 58.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.4e-70 270.4 203 69.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-70 270.4 255 57.6
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.4e-70 270.4 246 59.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.0e-70 269.2 215 63.3
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.0e-70 268.9 245 58.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.2e-70 268.5 246 60.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 6.7e-70 268.1 242 57.4
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 8.8e-70 267.7 206 69.4
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.2e-69 267.3 255 56.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.6e-69 266.2 248 57.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.7e-69 265.0 203 66.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.7e-69 265.0 234 61.5
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 7.5e-69 264.6 240 57.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.5e-69 264.6 261 58.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.7e-69 264.2 241 60.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.7e-68 262.3 243 56.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 6.3e-68 261.5 233 60.1
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.3e-68 261.5 209 61.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.3e-68 261.5 246 56.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.2e-68 261.2 239 57.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-67 260.8 201 63.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-67 260.4 183 70.5
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.3e-67 258.5 246 56.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 7.0e-67 258.1 201 62.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 9.1e-67 257.7 177 71.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-66 257.3 198 64.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.0e-66 256.5 177 70.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.0e-66 256.5 177 70.1
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.0e-66 256.5 185 67.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 3.5e-66 255.8 204 64.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 4.5e-66 255.4 219 61.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.9e-66 255.0 180 70.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.9e-66 255.0 180 70.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.9e-66 255.0 180 70.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 5.9e-66 255.0 269 55.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 7.7e-66 254.6 249 54.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.2e-65 253.1 237 57.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.9e-65 252.7 203 64.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.8e-65 252.3 175 70.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 5.0e-65 251.9 201 61.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.5e-64 250.4 175 69.7
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.9e-64 250.0 238 57.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.2e-64 249.2 167 76.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 4.2e-64 248.8 194 63.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 4.2e-64 248.8 148 79.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.2e-64 248.1 209 60.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.4e-64 247.7 244 54.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-63 247.3 162 76.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.1e-63 246.5 195 64.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.7e-63 245.4 251 53.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 4.7e-63 245.4 199 61.8
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.1e-63 245.0 159 73.6
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.0e-63 244.6 235 57.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.0e-62 244.2 159 74.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.4e-62 243.8 273 50.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.3e-62 243.0 177 68.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.5e-61 240.4 181 64.6
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.0e-61 240.0 143 81.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.4e-61 239.2 156 75.6
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.2e-60 236.5 151 73.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.8e-60 236.1 149 74.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.8e-59 233.4 152 72.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.7e-58 229.6 151 75.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.5e-58 228.8 156 73.7
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.3e-57 227.3 179 61.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.9e-57 226.1 199 57.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 4.2e-56 222.2 235 52.8
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.8e-55 219.5 198 57.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.1e-55 218.4 174 61.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.0e-54 216.1 129 78.3
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.2e-54 215.3 171 61.4
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.8e-54 214.9 195 61.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 8.8e-54 214.5 171 60.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-53 213.8 171 60.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.6e-53 213.0 154 66.9
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 9.8e-53 211.1 246 49.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.3e-52 208.0 200 53.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.8e-50 201.4 196 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.8e-46 188.3 168 55.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.9e-46 188.0 146 60.3
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.2e-45 187.6 196 55.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.0e-45 186.8 198 52.5
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 7.5e-45 184.9 143 61.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-44 183.7 211 50.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 6.4e-44 181.8 169 59.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.3e-44 181.4 150 57.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.1e-43 181.0 142 55.6
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.8e-43 180.3 182 53.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 7.0e-43 178.3 138 65.2
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.8e-38 163.7 175 51.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 8.9e-38 161.4 143 61.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.7e-34 149.8 148 56.1
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.9e-33 146.0 202 40.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-31 140.6 127 59.1
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.4e-29 132.9 157 51.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-26 124.0 174 46.6
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.0e-22 109.4 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.1e-19 99.4 140 37.9
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.3e-17 94.4 144 36.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-16 91.3 130 37.7
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.4e-14 84.3 153 34.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 9.0e-14 81.6 155 32.9
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.2e-11 73.2 83 50.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.1e-11 72.0 120 33.3
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.6e-10 69.3 169 32.0
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.3e-09 67.0 69 53.6
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 6.6e-09 65.5 120 30.0
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.2e-07 58.9 76 40.8


User provided reference genes

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