Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.7e-43 176.4 89 100.0
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.3e-26 120.2 93 73.1
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 8.6e-15 83.6 94 59.6
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.5e-14 80.9 89 53.9
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.5e-14 80.9 89 53.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.6e-13 79.3 89 53.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-13 79.3 89 53.9
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.6e-13 79.3 85 51.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.1e-13 79.0 94 52.1
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.1e-13 79.0 90 54.4
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.8e-13 78.6 91 52.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.0e-13 77.0 85 50.6
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.4e-12 76.3 89 53.9
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.8e-12 75.9 90 51.1
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-12 75.1 87 55.2
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.0e-12 75.1 91 51.6
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 5.2e-12 74.3 90 50.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.8e-12 73.9 95 49.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 6.8e-12 73.9 95 51.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 8.9e-12 73.6 87 49.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.9e-12 73.6 84 52.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 8.9e-12 73.6 87 49.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.9e-12 73.6 90 52.2
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.9e-12 73.6 96 53.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-11 73.2 76 56.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-11 73.2 90 50.0
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-11 72.8 98 56.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 95 48.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.5e-11 72.8 93 51.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-11 72.4 89 50.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-11 72.4 84 58.3
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-11 72.4 90 50.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-11 72.0 87 52.9
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 3.4e-11 71.6 88 52.3
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 4.4e-11 71.2 104 46.2
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.4e-11 71.2 95 49.5
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 4.4e-11 71.2 75 56.0
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 4.4e-11 71.2 90 51.1
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.7e-11 70.9 93 49.5
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.7e-11 70.9 87 49.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.5e-11 70.5 97 53.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.5e-11 70.5 86 52.3
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 9.8e-11 70.1 87 47.1
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.8e-11 70.1 90 50.0
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.8e-11 70.1 90 50.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.3e-10 69.7 98 43.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.3e-10 69.7 84 48.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-10 69.7 80 51.2
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-10 69.7 90 47.8
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.7e-10 69.3 89 53.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-10 69.3 91 50.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-10 68.9 90 50.0
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-10 68.9 90 46.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-10 68.9 85 48.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-10 68.9 95 47.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.8e-10 68.6 95 43.2
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.8e-10 68.6 89 44.9
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.8e-10 68.6 74 54.1
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-10 68.2 88 47.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.7e-10 68.2 84 48.8
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.7e-10 68.2 89 48.3
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 3.7e-10 68.2 88 52.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.9e-10 67.8 90 46.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.9e-10 67.8 89 47.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 4.9e-10 67.8 96 50.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.9e-10 67.8 96 50.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.3e-10 67.0 35 82.9
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.3e-10 67.0 85 51.8
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.3e-10 67.0 95 49.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-09 66.6 95 44.2
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-09 66.6 97 43.3
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.1e-09 66.6 94 46.8
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-09 66.2 80 51.2
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.4e-09 66.2 93 49.5
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-09 65.9 88 46.6
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-09 65.9 90 46.7
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.8e-09 65.9 93 45.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.8e-09 65.9 87 48.3
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-09 65.9 93 47.3
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-09 65.9 101 42.6
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.8e-09 65.9 94 44.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.4e-09 65.5 60 53.3
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-09 65.1 87 44.8
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-09 65.1 87 44.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-09 65.1 82 50.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.1e-09 65.1 86 47.7
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 3.1e-09 65.1 101 41.6
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.1e-09 65.1 89 47.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 9.2e-09 63.5 85 47.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-08 63.2 94 44.7
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-08 63.2 91 47.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.2e-08 63.2 38 71.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.6e-08 62.8 90 44.4
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-08 62.8 59 52.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.6e-08 62.8 95 46.3
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.6e-08 62.8 91 44.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-08 62.4 90 45.6
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.0e-08 62.4 86 51.2
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.0e-08 62.4 92 40.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.7e-08 62.0 43 62.8
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.7e-08 62.0 96 40.6
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.7e-08 62.0 95 43.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.7e-08 62.0 90 45.6
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.7e-08 62.0 81 48.1
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 3.5e-08 61.6 85 49.4
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 3.5e-08 61.6 94 42.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.5e-08 61.6 35 74.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.5e-08 61.6 41 65.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.5e-08 61.6 89 48.3
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.5e-08 61.6 87 46.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 4.5e-08 61.2 94 45.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.5e-08 61.2 93 46.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.9e-08 60.8 97 48.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 5.9e-08 60.8 39 71.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 5.9e-08 60.8 94 39.4
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.9e-08 60.8 96 45.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.9e-08 60.8 96 45.8
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 7.8e-08 60.5 86 45.3
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 7.8e-08 60.5 86 45.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 7.8e-08 60.5 91 38.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.0e-07 60.1 89 44.9
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.0e-07 60.1 90 46.7
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.0e-07 60.1 95 50.5
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 1.0e-07 60.1 93 40.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.0e-07 60.1 94 42.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.0e-07 60.1 79 45.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.3e-07 59.7 85 43.5
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.7e-07 59.3 73 47.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.7e-07 59.3 89 43.8
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.7e-07 59.3 80 45.0
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.3e-07 58.9 92 42.4
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-07 58.9 60 46.7
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 33 72.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.9e-07 58.5 89 48.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.9e-07 58.5 92 40.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.9e-07 58.5 87 37.9
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.9e-07 58.2 96 42.7
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 3.9e-07 58.2 85 43.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.6e-07 57.4 90 41.1
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 6.6e-07 57.4 100 38.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 6.6e-07 57.4 100 38.0
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.6e-07 57.4 95 38.9
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 8.6e-07 57.0 100 38.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 8.6e-07 57.0 100 38.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.6e-07 57.0 45 60.0
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.1e-06 56.6 93 45.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-06 56.6 89 42.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.5e-06 56.2 92 44.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.5e-06 56.2 92 44.6
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.5e-06 56.2 95 38.9
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-06 55.8 37 64.9
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-06 55.8 82 45.1
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.5e-06 55.5 80 46.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 3.3e-06 55.1 89 42.7
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 3.3e-06 55.1 55 49.1
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.3e-06 54.7 97 42.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-06 54.7 93 39.8
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 5.6e-06 54.3 95 38.9
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 5.6e-06 54.3 90 40.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.6e-06 54.3 98 38.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 7.3e-06 53.9 90 40.0
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.3e-06 53.9 95 38.9


User provided reference genes

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