Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 8.9e-116 420.2 206 100.0
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.9e-66 255.8 186 72.0
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.5e-49 199.5 176 63.6
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 5.5e-49 198.4 247 46.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 6.7e-47 191.4 202 51.5
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 1.5e-46 190.3 202 52.0
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.1e-44 182.6 241 46.9
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 5.3e-44 181.8 241 44.8
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.6e-43 180.3 247 44.9
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.6e-43 180.3 247 44.9
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.0e-42 177.6 247 44.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 5.5e-41 171.8 247 42.5
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 2.7e-40 169.5 242 44.6
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.6e-40 169.1 228 44.3
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 3.6e-40 169.1 220 46.8
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 8.0e-40 167.9 249 43.0
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 8.8e-39 164.5 228 42.5
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 2.6e-38 162.9 241 43.2
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 6.3e-37 158.3 196 45.9
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.4e-36 157.1 240 42.5
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.8e-36 156.8 246 41.5
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 3.5e-35 152.5 233 40.8
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 5.9e-35 151.8 198 43.9
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 2.5e-33 146.4 193 45.1
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 7.2e-33 144.8 244 39.8
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 7.2e-33 144.8 205 43.9
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 7.2e-33 144.8 196 45.9
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 9.5e-33 144.4 242 40.9
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.6e-32 142.5 232 39.7
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 8.0e-32 141.4 243 37.9
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.4e-31 140.6 209 42.6
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 3.0e-31 139.4 243 40.3
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 4.0e-31 139.0 245 38.8
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 8.9e-31 137.9 228 38.2
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 3.7e-29 132.5 249 38.6
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.1e-28 131.0 248 37.1
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.4e-28 129.8 227 38.8
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 3.1e-28 129.4 204 41.7
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 9.2e-28 127.9 195 41.5
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.2e-27 127.5 204 40.2
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.7e-26 123.6 223 39.5
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.7e-26 123.6 197 40.1
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 5.0e-26 122.1 218 38.1
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.0e-26 122.1 204 39.2
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 6.6e-26 121.7 207 38.2
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.3e-25 119.4 226 39.4
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.6e-24 117.1 205 38.5
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.6e-24 117.1 214 35.0
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.6e-24 117.1 242 36.0
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 3.6e-24 115.9 231 34.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.7e-24 115.5 241 36.5
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.3e-23 113.2 247 34.0
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 3.0e-23 112.8 219 37.9
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.5e-22 110.5 213 39.0
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 2.6e-22 109.8 244 36.1
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 2.6e-22 109.8 173 39.3
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 3.4e-22 109.4 207 39.6
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 5.8e-22 108.6 218 37.6
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 9.8e-22 107.8 219 36.1
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.7e-21 107.1 243 35.0
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 3.7e-21 105.9 193 38.3
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 4.9e-21 105.5 239 33.9
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 8.3e-21 104.8 250 32.4
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.8e-20 103.6 193 38.9
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.4e-20 103.2 252 31.7
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.4e-20 103.2 252 31.7
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 4.1e-20 102.4 287 31.0
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.4e-20 102.1 244 34.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 7.0e-20 101.7 196 36.2
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.1e-17 94.4 247 32.0
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 1.9e-17 93.6 195 31.3
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.9e-17 93.6 223 36.3
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 3.6e-16 89.4 208 34.1
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 3.6e-16 89.4 184 35.3
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 4.7e-16 89.0 133 43.6
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 1.1e-15 87.8 190 33.7
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 3.1e-15 86.3 84 48.8
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.0e-15 85.9 208 33.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 9.8e-14 81.3 194 32.5
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 1.7e-13 80.5 187 36.9
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.4e-12 77.4 128 40.6
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 4.1e-12 75.9 154 35.1
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 4.1e-12 75.9 206 31.6
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 7.0e-12 75.1 195 30.8
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 9.2e-12 74.7 109 41.3
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.6e-11 73.9 219 30.6
ECA247G1060 Erigeron canadensis HOM05D051946 ORTHO05D008965 6.0e-11 72.0 83 49.4
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 6.0e-11 72.0 77 46.8
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 1.0e-10 71.2 150 32.0
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 1.3e-10 70.9 81 45.7
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.9e-10 69.3 190 28.4
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 6.6e-10 68.6 147 31.3
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 2.5e-09 66.6 123 35.8
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 7.3e-09 65.1 81 48.1
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 7.3e-09 65.1 81 44.4
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 9.5e-09 64.7 91 40.7
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 1.2e-08 64.3 200 32.0
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 1.6e-08 63.9 86 41.9
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.6e-08 63.9 78 42.3
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.6e-08 63.9 148 30.4
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 3.6e-08 62.8 194 28.4
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 6.2e-08 62.0 198 29.3
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 1.1e-07 61.2 162 30.9
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 2.3e-07 60.1 192 29.7
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.2e-07 58.9 137 29.9
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 8.9e-07 58.2 151 30.5
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.2e-06 57.8 84 41.7
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 7.5e-06 55.1 112 32.1
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 9.9e-06 54.7 82 42.7


User provided reference genes

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